Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.6e-194 682.6 334 100.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 7.6e-165 583.9 387 76.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.7e-164 582.8 387 76.7
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.9e-164 581.3 387 75.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.4e-163 577.8 387 74.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 9.3e-163 577.0 389 75.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.7e-162 575.5 387 75.2
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 7.8e-162 573.9 390 75.4
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.0e-161 573.5 389 75.1
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.7e-161 572.8 379 76.3
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.7e-161 572.8 389 74.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.3e-161 572.4 386 75.4
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.5e-160 569.7 386 75.1
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.9e-160 569.3 387 74.4
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.5e-160 568.9 431 68.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 3.3e-160 568.5 389 74.3
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 5.6e-160 567.8 387 73.4
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.6e-160 567.8 390 74.1
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.3e-159 566.6 387 74.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.6e-159 566.2 387 73.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.8e-159 565.5 387 72.9
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 4.8e-159 564.7 389 73.3
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.2e-159 564.3 387 73.4
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 8.1e-159 563.9 389 73.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.1e-158 563.5 389 73.5
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.4e-158 563.1 388 73.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.4e-158 563.1 389 73.0
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.8e-158 562.8 387 72.9
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.8e-158 562.8 387 72.6
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.8e-158 562.8 389 73.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.8e-158 562.8 389 72.8
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 4.0e-158 561.6 389 73.8
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 5.3e-158 561.2 387 71.6
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.3e-158 561.2 389 72.5
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 5.3e-158 561.2 387 72.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 6.9e-158 560.8 387 73.1
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 6.9e-158 560.8 387 73.4
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 6.9e-158 560.8 389 72.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 9.0e-158 560.5 388 73.7
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-157 560.1 387 73.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.2e-157 560.1 388 72.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.5e-157 559.7 389 72.8
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.0e-157 559.3 389 72.5
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.0e-157 559.3 387 73.4
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.0e-157 559.3 389 73.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.0e-157 559.3 388 72.2
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.4e-157 558.5 389 72.8
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 3.4e-157 558.5 390 73.3
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 9.9e-157 557.0 389 72.2
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.3e-156 556.6 388 72.4
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.2e-156 555.8 387 71.8
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.2e-156 555.8 387 73.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.2e-156 555.8 388 72.2
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.2e-156 555.8 387 73.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.9e-156 555.4 387 72.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.8e-156 555.1 389 72.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 3.8e-156 555.1 388 71.9
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.8e-156 555.1 387 72.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.8e-156 555.1 388 71.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 4.9e-156 554.7 388 73.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 6.4e-156 554.3 387 72.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-155 553.5 388 71.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-155 553.5 388 71.6
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.4e-155 553.1 388 72.2
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.9e-155 552.7 388 72.2
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.9e-155 552.7 387 71.8
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.9e-155 552.7 387 72.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.4e-155 552.4 389 72.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.4e-155 552.4 389 72.0
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.2e-155 552.0 387 72.4
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.2e-155 551.6 387 71.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 5.4e-155 551.2 390 70.8
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 5.4e-155 551.2 430 66.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.1e-155 550.8 382 73.3
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.6e-154 549.7 387 72.6
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.6e-154 549.7 389 71.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.1e-154 549.3 388 72.2
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.1e-154 549.3 403 70.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.5e-154 548.5 389 72.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 6.0e-154 547.7 389 71.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.9e-154 547.4 383 72.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.0e-153 547.0 387 71.1
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.0e-153 547.0 387 70.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.0e-153 547.0 388 71.4
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.0e-153 547.0 387 71.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.3e-153 546.6 388 71.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.7e-153 546.2 388 71.1
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.3e-153 545.8 387 70.3
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.3e-153 545.8 387 70.3
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 3.0e-153 545.4 387 71.3
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.9e-153 545.0 402 69.9
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.9e-153 545.0 387 70.8
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.1e-153 544.7 389 70.7
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.6e-153 544.3 389 70.7
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.6e-153 544.3 387 70.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 8.7e-153 543.9 387 70.5
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 8.7e-153 543.9 389 71.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 8.7e-153 543.9 387 71.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.5e-152 543.1 387 70.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.9e-152 542.7 389 70.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 3.3e-152 542.0 387 70.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.3e-152 542.0 387 70.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 7.3e-152 540.8 387 70.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.6e-151 538.5 389 69.4
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 4.8e-151 538.1 373 73.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.2e-151 537.7 387 69.5
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.4e-150 536.6 388 70.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.8e-150 536.2 414 67.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.4e-150 535.8 388 70.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.4e-150 535.8 388 70.1
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.0e-149 532.7 389 68.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.6e-149 532.3 387 68.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.8e-149 531.2 389 67.9
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 9.9e-149 530.4 389 67.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.3e-148 530.0 454 62.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.9e-147 526.2 498 58.0
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 5.6e-144 514.6 398 67.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 4.9e-140 501.5 430 59.5
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.3e-139 497.3 389 65.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 5.7e-136 488.0 339 73.7
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.4e-134 482.6 389 62.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 7.6e-133 477.6 392 63.0
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.2e-132 476.1 339 70.5
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.0e-132 474.9 317 75.1
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 2.5e-131 472.6 393 62.1
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.1e-130 468.0 339 69.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.2e-125 453.8 389 62.7
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.9e-125 451.4 395 58.5
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.4e-123 444.1 393 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.1e-122 441.4 388 59.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.0e-121 440.7 387 57.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-121 439.1 344 66.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.9e-121 438.7 283 77.7
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.6e-117 426.0 382 56.8
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.7e-113 411.4 325 67.4
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.2e-96 357.5 382 50.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.6e-90 335.9 254 68.9
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.4e-88 328.9 255 65.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.0e-81 307.8 178 83.7
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 7.5e-80 301.6 364 47.0
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 7.5e-80 301.6 350 48.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.0e-78 295.0 221 67.0
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.7e-76 290.4 238 63.9
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 8.6e-76 288.1 227 66.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.3e-57 226.9 162 67.9
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 5.2e-57 225.7 376 39.1
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.0e-52 211.5 163 65.0
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.4e-49 201.1 104 92.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.0e-49 199.5 401 35.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 3.8e-47 193.0 124 76.6
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-40 171.0 125 64.8
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.6e-40 170.2 124 65.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.3e-20 104.8 82 59.8
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 2.1e-18 97.4 92 54.3


User provided reference genes

Program Settings