Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 5.0e-30 133.7 62 100.0
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 9.5e-13 76.3 39 87.2
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 1.1e-11 72.8 63 61.9
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.3e-11 71.6 62 62.9
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.3e-11 71.6 59 64.4
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 4.0e-11 70.9 59 62.7
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 5.2e-11 70.5 63 60.3
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 6.8e-11 70.1 63 60.3
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 8.9e-11 69.7 61 60.7
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 8.9e-11 69.7 61 60.7
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 8.9e-11 69.7 62 62.9
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 8.9e-11 69.7 63 60.3
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.2e-10 69.3 63 60.3
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 1.5e-10 68.9 63 60.3
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 2.0e-10 68.6 32 96.9
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.0e-10 68.6 63 60.3
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 2.6e-10 68.2 62 58.1
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 60.3
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 58.7
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 58.7
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 58.7
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 58.7
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 3.4e-10 67.8 63 58.7
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 59.7
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 59.7
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 59.7
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 59.7
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 58.1
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 4.4e-10 67.4 63 58.7
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 4.4e-10 67.4 63 58.7
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 4.4e-10 67.4 62 58.1
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 4.4e-10 67.4 63 58.7
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 5.8e-10 67.0 63 58.7
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 5.8e-10 67.0 63 58.7
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 5.8e-10 67.0 59 61.0
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 5.8e-10 67.0 59 61.0
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 7.5e-10 66.6 63 58.7
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 7.5e-10 66.6 63 58.7
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 7.5e-10 66.6 63 58.7
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 9.8e-10 66.2 63 58.7
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 9.8e-10 66.2 32 93.8
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 9.8e-10 66.2 63 58.7
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 1.3e-09 65.9 63 58.7
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.3e-09 65.9 63 57.1
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 1.3e-09 65.9 63 58.7
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.2e-09 65.1 63 58.7
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.2e-09 65.1 63 58.7
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.2e-09 65.1 63 58.7
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 2.9e-09 64.7 63 57.1
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 2.9e-09 64.7 63 55.6
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 2.9e-09 64.7 63 57.1
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 3.7e-09 64.3 63 57.1
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 3.7e-09 64.3 62 56.5
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 3.7e-09 64.3 63 58.7
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 3.7e-09 64.3 32 90.6
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 3.7e-09 64.3 32 90.6
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 3.7e-09 64.3 63 57.1
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 3.7e-09 64.3 63 57.1
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 58.7
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 4.9e-09 63.9 63 57.1
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 6.4e-09 63.5 63 57.1
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 8.3e-09 63.2 62 58.1
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 8.3e-09 63.2 63 57.1
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 8.3e-09 63.2 63 57.1
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.1e-08 62.8 57 61.4
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 1.1e-08 62.8 63 52.4
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 1.9e-08 62.0 63 55.6
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 1.9e-08 62.0 63 55.6
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.9e-08 62.0 61 57.4
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 2.4e-08 61.6 63 52.4
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 3.2e-08 61.2 59 57.6
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 3.2e-08 61.2 63 54.0
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 3.2e-08 61.2 63 55.6
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 3.2e-08 61.2 63 55.6
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 5.4e-08 60.5 59 57.6
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 5.4e-08 60.5 59 57.6
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 5.4e-08 60.5 59 57.6
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 5.4e-08 60.5 59 57.6
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 5.4e-08 60.5 59 57.6
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 5.4e-08 60.5 63 55.6
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 5.4e-08 60.5 62 56.5
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.4e-08 60.5 63 55.6
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.4e-08 60.5 63 55.6
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.4e-08 60.5 52 65.4
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 5.4e-08 60.5 29 93.1
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 7.1e-08 60.1 59 57.6
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 7.1e-08 60.1 59 57.6
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 7.1e-08 60.1 30 90.0
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 9.2e-08 59.7 58 55.2
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 1.2e-07 59.3 59 57.6
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 1.6e-07 58.9 59 55.9
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 2.7e-07 58.2 59 55.9
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 2.7e-07 58.2 65 49.2
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 3.5e-07 57.8 63 54.0
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 3.5e-07 57.8 63 54.0
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 3.5e-07 57.8 63 52.4
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 3.5e-07 57.8 63 54.0
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 3.5e-07 57.8 43 69.8
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 7.8e-07 56.6 59 54.2
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 7.8e-07 56.6 59 54.2
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 7.8e-07 56.6 59 54.2
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 7.8e-07 56.6 59 54.2
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 7.8e-07 56.6 59 54.2
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 7.8e-07 56.6 63 52.4
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.8e-07 56.6 32 84.4
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.8e-07 56.6 32 84.4
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.8e-07 56.6 32 84.4
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 7.8e-07 56.6 32 84.4
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 1.0e-06 56.2 49 57.1
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.0e-06 56.2 63 52.4
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 1.3e-06 55.8 63 50.8
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 1.7e-06 55.5 25 100.0
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 5.1e-06 53.9 59 52.5
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 5.1e-06 53.9 60 51.7
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 6.6e-06 53.5 63 50.8
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 8.6e-06 53.1 32 78.1


User provided reference genes

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