Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 7.2e-259 896.7 455 100.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.9e-90 336.7 555 42.3
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.4e-89 334.3 543 44.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.3e-82 311.2 552 42.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 3.8e-74 283.1 509 42.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.0e-71 275.0 725 34.6
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.2e-56 224.9 486 35.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.6e-54 215.3 447 37.6
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 6.2e-53 212.6 614 32.1
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.1e-48 197.6 453 35.8
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.1e-47 193.0 390 39.2
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.9e-46 191.0 392 37.5
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.5e-43 179.9 283 40.6
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 5.0e-34 149.8 358 38.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 7.2e-33 146.0 545 27.3
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.6e-32 144.8 401 33.2
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.8e-31 141.4 633 25.4
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.8e-31 141.4 484 29.3
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.3e-30 137.1 433 30.0
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.3e-30 137.1 141 54.6
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.7e-29 134.8 410 31.2
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 6.3e-29 132.9 418 30.1
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.8e-28 131.3 406 31.8
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.3e-28 129.8 402 32.8
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.6e-27 127.5 418 30.1
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.7e-26 124.8 387 32.3
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.7e-26 124.8 299 33.8
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 5.0e-26 123.2 520 27.7
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.5e-25 120.9 450 28.0
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.6e-24 118.2 275 38.5
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.6e-24 118.2 275 38.5
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.6e-24 118.2 370 30.3
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 6.1e-24 116.3 384 31.5
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 6.1e-24 116.3 349 33.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 3.9e-23 113.6 346 33.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.2e-23 113.2 349 32.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.8e-23 112.5 344 32.8
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.5e-22 111.7 503 26.0
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.6e-22 110.9 332 29.8
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.6e-22 110.9 337 33.2
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 5.7e-22 109.8 227 36.1
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 5.7e-22 109.8 266 39.1
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.2e-21 107.8 393 31.0
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.2e-21 107.8 357 33.1
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.2e-21 107.8 250 34.8
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.8e-21 107.5 265 36.6
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.7e-21 107.1 382 29.3
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 3.7e-21 107.1 396 26.8
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 8.2e-21 105.9 395 28.4
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 8.2e-21 105.9 181 38.1
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-20 105.5 383 28.7
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 1.8e-20 104.8 154 43.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.4e-20 104.4 417 30.0
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.1e-20 104.0 369 30.9
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 4.1e-20 103.6 263 33.8
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.3e-20 103.2 325 33.8
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.3e-20 103.2 94 54.3
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.0e-19 101.3 94 50.0
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 2.6e-19 100.9 326 33.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 3.5e-19 100.5 308 30.8
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.5e-19 100.1 249 32.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 5.9e-19 99.8 395 28.1
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 7.7e-19 99.4 143 40.6
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.0e-18 99.0 440 28.6
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.0e-18 99.0 394 27.2
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 1.3e-18 98.6 159 37.1
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.3e-18 98.6 343 28.6
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.2e-18 97.8 167 39.5
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.2e-18 97.8 298 30.2
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 2.9e-18 97.4 157 37.6
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.9e-18 97.4 132 41.7
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 2.9e-18 97.4 281 30.6
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 5.0e-18 96.7 316 29.7
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 6.5e-18 96.3 271 33.2
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 8.5e-18 95.9 322 27.6
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.5e-18 95.9 264 30.3
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 1.9e-17 94.7 172 33.7
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.5e-17 94.4 240 28.3
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 2.5e-17 94.4 187 33.2
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 2.5e-17 94.4 245 33.1
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.2e-17 94.0 77 55.8
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 5.5e-17 93.2 392 29.1
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 5.5e-17 93.2 337 28.8
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 7.2e-17 92.8 409 26.9
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 7.2e-17 92.8 392 26.3
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 7.2e-17 92.8 105 48.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 9.4e-17 92.4 176 35.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 9.4e-17 92.4 353 29.5
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 9.4e-17 92.4 281 29.9
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 2.1e-16 91.3 229 33.6
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 4.7e-16 90.1 303 30.4
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 4.7e-16 90.1 84 52.4
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 6.1e-16 89.7 98 44.9
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.0e-15 89.0 336 28.0
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 1.4e-15 88.6 416 27.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.4e-15 88.6 136 41.9
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.4e-15 88.6 142 40.1
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.3e-15 87.8 302 29.5
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 3.0e-15 87.4 178 34.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.2e-15 86.7 396 28.8
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.8e-15 85.9 331 29.9
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 8.8e-15 85.9 360 27.5
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.2e-14 85.5 284 32.7
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.2e-14 85.5 237 31.2
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 1.2e-14 85.5 153 34.0
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.5e-14 85.1 84 45.2
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 3.4e-14 84.0 98 45.9
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 5.7e-14 83.2 342 30.1
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 5.7e-14 83.2 163 31.9
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.7e-14 83.2 89 46.1
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 5.7e-14 83.2 80 48.8
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 7.5e-14 82.8 205 31.2
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 7.5e-14 82.8 347 27.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 9.7e-14 82.4 223 35.9
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.7e-13 80.5 83 47.0
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.3e-13 79.3 355 25.9
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 1.4e-12 78.6 334 26.6
Prupe.2G292800 Prunus persica HOM05D003520 ORTHO05D003332 2.4e-12 77.8 321 27.7
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.1e-12 77.4 233 33.0
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 3.1e-12 77.4 227 31.3
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.1e-12 77.4 303 27.4
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 5.3e-12 76.6 72 51.4
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 9.1e-12 75.9 83 45.8
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 9.1e-12 75.9 67 47.8
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.6e-11 75.1 263 29.3
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-11 75.1 70 47.1
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.6e-11 75.1 295 30.8
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.0e-11 74.7 84 40.5
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.7e-11 74.3 460 24.8
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 2.7e-11 74.3 61 50.8
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 2.7e-11 74.3 122 40.2
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.5e-11 73.9 461 24.3
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 4.5e-11 73.6 67 50.7
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 7.7e-11 72.8 97 39.2
Actinidia34100 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.0e-10 72.4 289 26.0
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 1.0e-10 72.4 86 38.4
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.0e-10 72.4 264 30.3
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.7e-10 71.6 81 42.0
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 1.7e-10 71.6 86 39.5
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 1.7e-10 71.6 81 48.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 2.2e-10 71.2 83 44.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 2.9e-10 70.9 123 35.0
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.8e-10 70.5 140 40.7
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 5.0e-10 70.1 90 41.1
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 5.0e-10 70.1 74 41.9
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 5.0e-10 70.1 74 41.9
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.0e-10 70.1 177 32.2
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.0e-10 70.1 177 32.2
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 6.5e-10 69.7 64 51.6
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 6.5e-10 69.7 340 23.2
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 6.5e-10 69.7 123 34.1
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 6.5e-10 69.7 110 37.3
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 8.5e-10 69.3 416 23.6
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-09 68.9 70 47.1
CDE02G3421 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.1e-09 68.9 203 28.6
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.5e-09 68.6 347 24.5
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 1.9e-09 68.2 242 29.3
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.5e-09 67.8 283 29.0
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.2e-09 67.4 59 54.2
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 3.2e-09 67.4 69 49.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.5e-09 66.6 251 25.5
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 7.2e-09 66.2 130 36.9
Zm00001eb338110 Zea mays HOM05D003520 ORTHO05D003332 3.6e-08 63.9 54 55.6
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 6.1e-08 63.2 214 27.6
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 6.1e-08 63.2 229 28.4
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 6.1e-08 63.2 115 38.3
Hund04730 Selenicereus undatus HOM05D025484 ORTHO05D003332 8.0e-08 62.8 343 28.9
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.0e-07 62.4 399 24.6
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 1.4e-07 62.0 235 28.9
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 2.3e-07 61.2 215 29.3
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 3.0e-07 60.8 59 52.5
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 4.0e-07 60.5 105 31.4
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 5.2e-07 60.1 295 27.5
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.2e-07 60.1 276 24.6
Os04g0193200 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.0e-06 58.2 58 44.8
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.6e-06 57.8 240 23.3
Sabra12G0103700 Salix brachista HOM05D003520 ORTHO05D003332 2.6e-06 57.8 102 35.3
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 3.4e-06 57.4 403 25.1
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 3.4e-06 57.4 385 23.1
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 3.4e-06 57.4 56 42.9
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.4e-06 57.4 119 36.1
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 3.4e-06 57.4 64 45.3
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 9.8e-06 55.8 253 25.7


User provided reference genes

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