Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014084 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 1.2e-91 339.7 162 100.0
CSS0014674 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 4.5e-54 214.9 169 68.0
CSS0017896 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 4.5e-54 214.9 169 68.0
CSS0040242 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 3.4e-38 162.2 162 59.9
Nitab4.5_0008533g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 9.5e-12 74.3 36 97.2
CSS0008574 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 1.2e-11 73.9 39 89.7
Actinidia17335 Actinidia chinensis HOM05D002169 ORTHO05D006577 2.1e-11 73.2 36 97.2
Actinidia22888 Actinidia chinensis HOM05D002169 ORTHO05D006577 2.1e-11 73.2 36 97.2
Rhsim10G0192800 Rhododendron simsii HOM05D002169 ORTHO05D006577 2.1e-11 73.2 36 97.2
vmacro20619 Vaccinium macrocarpon HOM05D002169 ORTHO05D006577 2.1e-11 73.2 36 97.2
Aa31LG8G14800 Aethionema arabicum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Aqoxy6G01571 Aquilegia oxysepala HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
AL3G50440 Arabidopsis lyrata HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
BcaB07g31725 Brassica carinata HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
BcaC04g22967 Brassica carinata HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
A09p11420 Brassica napus HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
C09p13440 Brassica napus HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
BolC9t54234H Brassica oleracea HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
BraA09t36782Z Brassica rapa HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Carub.0003s3157 Capsella rubella HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
CAN.G1238.30 Capsicum annuum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Cpa.g.sc6.358 Carica papaya HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
AUR62003736 Chenopodium quinoa HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
AUR62016565 Chenopodium quinoa HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Cc07_g12000 Coffea canephora HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
COL.COLO4_22562 Corchorus olitorius HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Duzib147G0840 Durio zibethinus HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Thhalv10022534m.g Eutrema salsugineum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Gohir.A07G171800 Gossypium hirsutum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Gohir.D07G178500 Gossypium hirsutum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Gorai.001G199700 Gossypium raimondii HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Nitab4.5_0001467g0120 Nicotiana tabacum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Peaxi162Scf00040g03136 Petunia axillaris HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Sp3g30870 Schrenkiella parvula HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Solyc02g082460.3 Solanum lycopersicum HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Sopen02g027150 Solanum pennellii HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
THA.LOC104819712 Tarenaya hassleriana HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Thecc.01G003600 Theobroma cacao HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
unitig_747.g21786 Utricularia gibba HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
HPP92_021382 Vanilla planifolia HOM05D002169 ORTHO05D006577 2.7e-11 72.8 36 94.4
Oeu012456.1 Olea europaea HOM05D002169 ORTHO05D006577 3.6e-11 72.4 36 94.4
CANSAT64G0090 Cannabis sativa HOM05D002169 ORTHO05D006577 4.7e-11 72.0 39 84.6
Atru.chr3.27 Acer truncatum HOM05D002169 ORTHO05D006577 6.1e-11 71.6 36 94.4
EL10Ac6g15040 Beta vulgaris HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
BcaB03g16519 Brassica carinata HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
DCAR_019080 Daucus carota HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
PGR004G0941 Punica granatum HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
Hund19690 Selenicereus undatus HOM05D002169 ORTHO05D006577 8.0e-11 71.2 34 100.0
Sc10g0009280 Simmondsia chinensis HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
TWI73G1258 Tripterygium wilfordii HOM05D002169 ORTHO05D006577 8.0e-11 71.2 36 91.7
CARHR107670 Cardamine hirsuta HOM05D002169 ORTHO05D006577 1.0e-10 70.9 36 91.7
Migut.L00778 Erythranthe guttata HOM05D002169 ORTHO05D006577 1.0e-10 70.9 39 82.1
Sabra07G0050400 Salix brachista HOM05D002169 ORTHO05D006577 1.4e-10 70.5 36 91.7
MSTRG.3634 Avicennia marina HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 88.9
Haze_03631 Corylus avellana HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 91.7
ECA238G3790 Erigeron canadensis HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 86.1
HanXRQChr14g0443111 Helianthus annuus HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 86.1
Lsat_1_v5_gn_2_73920 Lactuca sativa HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 86.1
Manes.01G156500 Manihot esculenta HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 91.7
Potri.007G059100 Populus trichocarpa HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 91.7
SalBow6G5571 Salvia bowleyana HOM05D002169 ORTHO05D006577 1.8e-10 70.1 36 88.9
Ciclev10024818m.g Citrus clementina HOM05D002169 ORTHO05D006577 2.3e-10 69.7 34 97.1
Eucgr.J00205 Eucalyptus grandis HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FvH4_1g10170 Fragaria vesca HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FAN19G1591 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FAN23G0161 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FAN23G2634 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FAN26G1091 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
Lj4A238G77 Lonicera japonica HOM05D002169 ORTHO05D006577 3.0e-10 69.3 35 91.4
Prupe.7G185100 Prunus persica HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
SHI29554 Sapria himalayana HOM05D002169 ORTHO05D006577 3.0e-10 69.3 36 88.9
CDE06G1921 Ceratophyllum demersum HOM05D002169 ORTHO05D006577 4.0e-10 68.9 36 91.7
Nitab4.5_0010278g0010 Nicotiana tabacum HOM05D002169 ORTHO05D024709 4.0e-10 68.9 35 91.4
GSVIVG01022300001 Vitis vinifera HOM05D002169 ORTHO05D006577 4.0e-10 68.9 36 91.7
Cfa007098 Carpinus fangiana HOM05D002169 ORTHO05D006577 5.2e-10 68.6 36 88.9
CiPaw.07G001100 Carya illinoinensis HOM05D002169 ORTHO05D006577 5.2e-10 68.6 45 73.3
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla HOM05D002169 ORTHO05D006577 5.2e-10 68.6 36 88.9
TAR381G0949 Trochodendron aralioides HOM05D002169 ORTHO05D006577 5.2e-10 68.6 36 88.9
TAR628G0475 Trochodendron aralioides HOM05D002169 ORTHO05D006577 5.2e-10 68.6 36 88.9
RcHm_v2.0_Chr2g0096961 Rosa chinensis HOM05D002169 ORTHO05D006577 6.8e-10 68.2 36 86.1
ATR0807G141 Amborella trichopoda HOM05D002169 ORTHO05D006577 8.8e-10 67.8 36 86.1
MD02G1113900 Malus domestica HOM05D002169 ORTHO05D006577 8.8e-10 67.8 36 86.1
MD15G1229000 Malus domestica HOM05D002169 ORTHO05D006577 8.8e-10 67.8 36 86.1
Mapoly0081s0047 Marchantia polymorpha HOM05D002169 ORTHO05D006577 8.8e-10 67.8 36 83.3
QL06p053209 Quercus lobata HOM05D002169 ORTHO05D006577 8.8e-10 67.8 34 94.1
Dinv28311 Davidia involucrata HOM05D002169 ORTHO05D006577 1.2e-09 67.4 36 88.9
PSO675G7681 Papaver somniferum HOM05D002169 ORTHO05D006577 1.2e-09 67.4 36 86.1
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Ca_02844_v3 Cicer arietinum L. HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
MELO3C018432.2 Cucumis melo HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
CsaV3_7G008800 Cucumis sativus L. HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Dinv40201 Davidia involucrata HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Glyma.04G221900 Glycine max HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Glyma.06G143500 Glycine max HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Lalb_Chr10g0097551 Lupinus albus HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Phvul.009G142600 Phaseolus vulgaris HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
Psat4g104600 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
TPR.G13725 Trifolium pratense HOM05D002169 ORTHO05D006577 1.5e-09 67.0 34 94.1
BcaNung04615 Brassica carinata HOM05D002169 ORTHO05D006577 2.0e-09 66.6 34 94.1
Lj4g0016756 Lotus japonicus HOM05D002169 ORTHO05D006577 2.0e-09 66.6 34 94.1
Sed0000096 Sechium edule HOM05D002169 ORTHO05D006577 2.0e-09 66.6 34 91.2
Cfa013486 Carpinus fangiana HOM05D002169 ORTHO05D006577 2.6e-09 66.2 36 86.1
SEGI_16039 Sequoiadendron giganteum HOM05D002169 ORTHO05D006577 3.4e-09 65.9 36 83.3
Pp3c16_17530 Physcomitrium patens HOM05D002169 ORTHO05D006577 5.7e-09 65.1 36 80.6
SMO228G0179 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 5.7e-09 65.1 36 80.6
Zm00001eb002260 Zea mays HOM05D002169 ORTHO05D006577 5.7e-09 65.1 36 80.6
AT2G17510 Arabidopsis thaliana HOM05D002169 ORTHO05D006577 7.5e-09 64.7 36 83.3
PSO541G0991 Papaver somniferum HOM05D002169 ORTHO05D006577 9.8e-09 64.3 36 83.3
Psat0s2855g0160 Pisum sativum HOM05D002169 ORTHO05D006577 4.9e-08 62.0 33 87.9
Medtr8g073170 Medicago truncatula HOM05D002169 ORTHO05D006577 6.3e-08 61.6 34 85.3
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis HOM05D002169 ORTHO05D006577 1.1e-07 60.8 36 77.8
PRCOL_00000788 Prasinoderma coloniale HOM05D002169 ORTHO05D006577 5.4e-07 58.5 36 69.4
Cre14.g613850 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 5.9e-06 55.1 36 69.4


User provided reference genes

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