Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 4.8e-48 194.1 96 100.0
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 8.6e-13 77.0 51 78.4
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 5.6e-12 74.3 52 71.2
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 3.6e-11 71.6 47 74.5
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 1.4e-10 69.7 35 88.6
CiPaw.01G210100 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.4e-10 68.9 37 86.5
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-10 68.9 55 63.6
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 2.4e-10 68.9 46 78.3
Duzib192G0302 Durio zibethinus HOM05D001415 ORTHO05D001075 4.0e-10 68.2 47 70.2
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 4.0e-10 68.2 35 88.6
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 5.2e-10 67.8 49 71.4
COL.COLO4_30888 Corchorus olitorius HOM05D001415 ORTHO05D001075 5.2e-10 67.8 38 78.9
Nn6g31497 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.2e-10 67.8 52 73.1
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 6.8e-10 67.4 44 70.5
Phvul.009G260600 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.8e-10 67.4 52 71.2
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.8e-10 67.4 47 66.0
Thecc.06G132000 Theobroma cacao HOM05D001415 ORTHO05D001075 6.8e-10 67.4 47 70.2
MELO3C024301.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.9e-10 67.0 41 75.6
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 8.9e-10 67.0 45 68.9
Gohir.D06G147900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-09 65.9 47 68.1
Gorai.010G172400 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.0e-09 65.9 47 68.1
Gohir.A06G142100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.6e-09 65.5 47 68.1
Gohir.A05G142400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.4e-09 65.1 41 70.7
MD09G1171200 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-09 65.1 35 82.9
Gorai.009G148600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.4e-09 64.7 47 61.7
Lj1g0021078 Lotus japonicus HOM05D001415 ORTHO05D001075 4.4e-09 64.7 39 82.1
PGSC0003DMG400009157 Solanum tuberosum HOM05D001415 ORTHO05D001075 4.4e-09 64.7 47 70.2
CAN.G790.46 Capsicum annuum HOM05D001415 ORTHO05D001075 5.8e-09 64.3 47 70.2
CsaV3_7G033880 Cucumis sativus L. HOM05D001415 ORTHO05D001075 5.8e-09 64.3 38 81.6
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.8e-09 64.3 37 78.4
PGR119G2183 Punica granatum HOM05D001415 ORTHO05D001075 5.8e-09 64.3 37 86.5
Aa31LG8G1630 Aethionema arabicum HOM05D000146 ORTHO05D007947 7.6e-09 63.9 36 80.6
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.6e-09 63.9 35 82.9
Aqoxy7G04200 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 1.3e-08 63.2 31 90.3
AL1G62400 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.3e-08 63.2 37 78.4
AT1G53708 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.3e-08 63.2 37 78.4
A08p01440 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-08 63.2 37 78.4
BolC6t36025H Brassica oleracea HOM05D001415 ORTHO05D001075 1.3e-08 63.2 37 78.4
Carub.0001s4298 Capsella rubella HOM05D001415 ORTHO05D001075 1.3e-08 63.2 37 78.4
Glyma.07G047000 Glycine max HOM05D001415 ORTHO05D001075 1.3e-08 63.2 35 80.0
Glyma.16G015200 Glycine max HOM05D001415 ORTHO05D001075 1.3e-08 63.2 35 80.0
Gohir.D05G144700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-08 63.2 47 59.6
Lalb_Chr18g0044821 Lupinus albus HOM05D001415 ORTHO05D001075 1.3e-08 63.2 52 65.4
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.2e-08 62.4 41 75.6
RcHm_v2.0_Chr2g0148241 Rosa chinensis HOM05D001415 ORTHO05D001075 2.2e-08 62.4 35 82.9
THA.LOC104810403 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.2e-08 62.4 36 77.8
Lalb_Chr04g0254011 Lupinus albus HOM05D001415 ORTHO05D001075 2.9e-08 62.0 50 66.0
Ca_23470_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 3.8e-08 61.6 52 61.5
Migut.D00904 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.8e-08 61.6 57 59.6
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-08 61.6 37 75.7
AL3G26700 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 4.9e-08 61.2 52 61.5
AT3G14362 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 4.9e-08 61.2 52 61.5
arahy.Tifrunner.gnm1.ann1.S2C0P1 Arachis hypogaea HOM05D001415 ORTHO05D001075 4.9e-08 61.2 37 78.4
Carub.0003s1407 Capsella rubella HOM05D001415 ORTHO05D001075 4.9e-08 61.2 52 61.5
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 6.4e-08 60.8 46 65.2
THA.LOC104822609 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 8.4e-08 60.5 36 75.0
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 1.1e-07 60.1 37 73.0
A03p38770 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
A05p35030 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
C05p52990 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BolC3t16958H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BraA01t03976Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BraA03t13025Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BraA05t22317Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BraA08t32195Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-07 60.1 37 75.7
CARHR089420 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.1e-07 60.1 36 75.0
BolC5t33977H Brassica oleracea HOM05D001415 ORTHO05D001075 1.4e-07 59.7 52 59.6
Medtr8g023610 Medicago truncatula HOM05D001415 ORTHO05D001075 1.4e-07 59.7 35 77.1
TPR.G26464 Trifolium pratense HOM05D001415 ORTHO05D001075 1.4e-07 59.7 35 77.1
A01p39330 Brassica napus HOM05D001415 ORTHO05D001075 2.4e-07 58.9 36 72.2
BolC3t21494H Brassica oleracea HOM05D001415 ORTHO05D001075 2.4e-07 58.9 37 75.7
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 2.4e-07 58.9 42 66.7
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 2.4e-07 58.9 42 66.7
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 5.4e-07 57.8 56 55.4
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 7.1e-07 57.4 40 65.0
Cpa.g.sc157.2 Carica papaya HOM05D001415 ORTHO05D001075 7.1e-07 57.4 35 74.3
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 9.3e-07 57.0 52 55.8
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 9.3e-07 57.0 52 55.8
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 9.3e-07 57.0 42 61.9
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 9.3e-07 57.0 56 51.8
HPP92_027005 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.3e-07 57.0 38 63.2
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 1.2e-06 56.6 48 58.3
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.2e-06 56.6 45 57.8
Medtr7g117490 Medicago truncatula HOM05D001415 ORTHO05D001075 1.6e-06 56.2 34 76.5
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 1.6e-06 56.2 31 77.4
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.1e-06 55.8 39 64.1
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.1e-06 55.8 39 64.1
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-06 55.8 49 57.1
C01p50150 Brassica napus HOM05D001415 ORTHO05D001075 2.1e-06 55.8 36 72.2
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 2.1e-06 55.8 49 57.1
BolC1t04969H Brassica oleracea HOM05D001415 ORTHO05D001075 2.1e-06 55.8 36 72.2
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.1e-06 55.8 49 53.1
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 2.1e-06 55.8 38 71.1
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.1e-06 55.8 29 82.8
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.1e-06 55.8 29 82.8
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.1e-06 55.8 32 71.9
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 2.1e-06 55.8 29 82.8
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 2.1e-06 55.8 48 56.2
Phvul.010G121900 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.1e-06 55.8 36 80.6
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 2.1e-06 55.8 44 59.1
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 2.1e-06 55.8 50 56.0
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 2.7e-06 55.5 38 68.4
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 2.7e-06 55.5 50 56.0
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 2.7e-06 55.5 31 74.2
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 2.7e-06 55.5 56 55.4
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 2.7e-06 55.5 29 82.8
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 2.7e-06 55.5 29 82.8
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.5e-06 55.1 29 79.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.5e-06 55.1 29 79.3
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 3.5e-06 55.1 38 65.8
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 3.5e-06 55.1 43 60.5
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 55.1 29 79.3
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 55.1 29 79.3
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 3.5e-06 55.1 47 55.3
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
BcaB02g08412 Brassica carinata HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
BcaB02g08413 Brassica carinata HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
BcaC02g09763 Brassica carinata HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
A04p04410 Brassica napus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
C04p36850 Brassica napus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
BolC4t25114H Brassica oleracea HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 4.6e-06 54.7 44 61.4
BraA04t16154Z Brassica rapa HOM05D001415 ORTHO05D001075 4.6e-06 54.7 36 63.9
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 4.6e-06 54.7 44 59.1
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 4.6e-06 54.7 29 79.3
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Lalb_Chr10g0101041 Lupinus albus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 50 60.0
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 4.6e-06 54.7 29 79.3
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 6.0e-06 54.3 50 54.0
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 6.0e-06 54.3 36 63.9
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 6.0e-06 54.3 44 61.4
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 6.0e-06 54.3 36 63.9
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 6.0e-06 54.3 36 63.9
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 6.0e-06 54.3 36 63.9
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 6.0e-06 54.3 44 61.4
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 6.0e-06 54.3 36 63.9
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 6.0e-06 54.3 29 79.3
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 6.0e-06 54.3 29 79.3
Thhalv10010948m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 6.0e-06 54.3 50 52.0
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.0e-06 54.3 38 68.4
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.0e-06 54.3 38 68.4
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.0e-06 54.3 38 68.4
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 6.0e-06 54.3 29 79.3
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.0e-06 54.3 29 79.3
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.0e-06 54.3 35 68.6
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 6.0e-06 54.3 49 51.0
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 7.8e-06 53.9 45 60.0
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 7.8e-06 53.9 43 60.5
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 7.8e-06 53.9 37 67.6
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 7.8e-06 53.9 38 63.2
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 7.8e-06 53.9 31 71.0
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 7.8e-06 53.9 46 58.7


User provided reference genes

Program Settings