Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.0e-117 425.2 221 100.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.3e-101 372.5 222 86.9
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 4.8e-99 364.8 222 83.8
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.8e-98 362.8 222 82.0
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 2.4e-98 362.5 223 82.5
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.1e-98 362.1 222 82.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 4.5e-97 358.2 221 81.9
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 7.6e-97 357.5 222 80.6
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.3e-96 356.7 222 81.1
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.8e-96 355.1 224 82.1
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 4.9e-96 354.8 223 82.5
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 4.9e-96 354.8 222 80.2
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 6.5e-96 354.4 222 80.2
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.1e-95 353.6 219 81.7
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.9e-95 352.8 222 79.7
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 7.1e-95 350.9 222 78.8
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 9.3e-95 350.5 222 79.7
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.1e-94 349.4 228 81.1
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.1e-94 349.4 259 74.5
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.5e-94 348.6 224 80.8
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.5e-94 348.6 224 80.8
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 4.6e-94 348.2 222 78.8
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 4.6e-94 348.2 222 77.5
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 7.9e-94 347.4 221 80.5
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 7.9e-94 347.4 222 78.4
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.0e-93 347.1 215 81.4
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.0e-93 347.1 224 79.5
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.8e-93 346.3 224 80.4
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 2.3e-93 345.9 221 77.8
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.0e-93 345.5 222 78.8
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 3.9e-93 345.1 222 77.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 8.7e-93 344.0 219 79.0
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.1e-92 343.6 226 76.1
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.5e-92 343.2 220 79.1
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.5e-92 343.2 220 78.2
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.9e-92 342.8 222 79.7
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.9e-92 342.8 222 77.0
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.5e-92 342.4 222 78.8
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 3.3e-92 342.0 222 77.5
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.3e-92 342.0 222 78.4
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.6e-91 339.7 227 76.2
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.8e-91 339.0 222 77.5
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.8e-91 339.0 220 77.3
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 6.3e-91 337.8 218 80.3
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 6.3e-91 337.8 218 78.0
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 8.2e-91 337.4 221 78.3
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-90 337.0 224 77.2
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.4e-90 336.7 224 77.2
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.8e-90 336.3 217 79.3
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.1e-90 335.1 224 76.8
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 9.0e-90 334.0 218 77.1
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 9.0e-90 334.0 222 76.6
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 9.0e-90 334.0 220 77.7
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.5e-89 333.2 221 74.7
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.5e-89 333.2 241 72.6
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 2.0e-89 332.8 224 77.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 4.5e-89 331.6 218 76.6
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 7.6e-89 330.9 221 74.2
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 3.8e-88 328.6 219 75.8
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.1e-87 327.0 215 79.1
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.6e-86 322.0 216 75.5
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.3e-85 319.3 220 71.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 3.9e-85 318.5 225 74.2
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 8.7e-85 317.4 225 73.8
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-84 317.0 224 74.6
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.1e-84 317.0 224 74.1
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 1.9e-84 316.2 225 73.3
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.9e-84 316.2 225 73.3
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.5e-84 315.8 225 73.3
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.5e-84 315.8 225 73.3
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 3.3e-84 315.5 223 72.6
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 4.3e-84 315.1 221 69.2
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 5.7e-84 314.7 225 72.0
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 5.7e-84 314.7 225 73.8
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 7.4e-84 314.3 224 73.2
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.4e-84 314.3 225 72.9
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 7.4e-84 314.3 344 54.9
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.3e-83 313.5 223 72.2
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.8e-83 312.4 225 72.4
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 4.8e-83 311.6 225 72.4
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 4.8e-83 311.6 240 69.2
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.5e-81 306.6 214 72.0
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.0e-80 303.9 218 70.6
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.0e-77 293.9 192 80.7
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.4e-77 293.5 195 75.4
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.4e-74 283.5 247 62.3
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 2.6e-73 279.3 220 65.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.2e-71 271.9 224 67.0
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.6e-70 268.9 232 62.1
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-67 260.4 245 61.2
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.3e-67 260.4 222 65.8
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 8.0e-62 241.1 218 55.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.0e-61 240.7 220 56.4
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 4.8e-59 231.9 182 63.7
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 6.5e-56 221.5 219 53.9
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.8e-53 211.5 217 50.7
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 5.7e-52 208.4 258 50.8
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 7.5e-52 208.0 158 67.7
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 1.8e-45 186.8 212 47.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 8.3e-43 177.9 147 60.5
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 8.6e-40 167.9 116 73.3
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.3e-39 166.0 108 77.8
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 8.9e-37 157.9 115 71.3
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.4e-34 149.8 222 48.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.2e-22 110.9 126 49.2
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 5.8e-20 102.1 82 65.9
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 4.1e-10 69.3 75 48.0
CSS0030339 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 1.5e-07 60.8 98 45.9
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 6.2e-06 55.5 37 75.7


User provided reference genes

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