Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.6e-113 411.0 212 100.0
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.3e-65 252.3 212 68.4
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 8.4e-61 237.7 216 63.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 8.4e-61 237.7 216 63.4
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.0e-58 230.7 213 61.5
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 1.9e-57 226.5 195 62.6
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.6e-56 223.4 213 61.0
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 2.8e-56 222.6 150 75.3
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.8e-56 222.6 210 61.4
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.7e-56 222.2 209 59.3
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.1e-55 220.7 132 80.3
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.1e-55 220.7 147 73.5
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.4e-55 220.3 116 84.5
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.8e-55 219.9 136 75.7
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.4e-55 219.5 130 80.8
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 3.1e-55 219.2 123 82.9
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 4.1e-55 218.8 151 72.2
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 6.9e-55 218.0 151 72.2
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 6.9e-55 218.0 137 76.6
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 9.0e-55 217.6 181 65.2
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.2e-54 217.2 159 66.7
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 2.6e-54 216.1 124 80.6
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.6e-54 216.1 167 62.9
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 4.5e-54 215.3 134 75.4
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 5.9e-54 214.9 160 68.1
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 5.9e-54 214.9 113 85.0
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 7.7e-54 214.5 171 67.3
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 7.7e-54 214.5 118 83.9
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.7e-53 213.4 148 73.0
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 2.2e-53 213.0 148 68.9
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.2e-53 213.0 233 54.5
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 3.8e-53 212.2 111 87.4
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 5.0e-53 211.8 150 70.0
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 6.5e-53 211.5 118 81.4
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 6.5e-53 211.5 153 71.9
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 6.5e-53 211.5 211 56.9
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 8.5e-53 211.1 158 67.1
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 8.5e-53 211.1 162 69.8
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 1.1e-52 210.7 113 84.1
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.1e-52 210.7 113 84.1
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.4e-52 210.3 202 58.4
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 2.5e-52 209.5 122 78.7
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 2.5e-52 209.5 122 78.7
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 2.5e-52 209.5 136 71.3
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.5e-52 209.5 164 66.5
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 3.2e-52 209.1 122 77.9
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.2e-52 209.1 132 75.8
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 5.5e-52 208.4 153 68.6
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 5.5e-52 208.4 122 77.9
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.5e-52 208.4 147 72.1
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.5e-52 208.4 153 71.2
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 7.2e-52 208.0 124 77.4
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 9.4e-52 207.6 122 78.7
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.6e-51 206.8 124 77.4
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.6e-51 206.8 122 77.9
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.6e-51 206.8 122 77.9
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.6e-51 206.8 122 77.9
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.6e-51 206.8 128 75.8
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 2.1e-51 206.5 122 77.0
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.1e-51 206.5 206 57.8
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 2.7e-51 206.1 151 66.2
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 3.6e-51 205.7 153 64.7
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 4.6e-51 205.3 170 62.9
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 4.6e-51 205.3 127 78.0
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 6.1e-51 204.9 176 60.2
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 6.1e-51 204.9 165 66.7
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 7.9e-51 204.5 123 75.6
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 7.9e-51 204.5 163 65.0
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 7.9e-51 204.5 146 69.2
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.0e-50 204.1 129 73.6
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.0e-50 204.1 167 61.7
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 1.0e-50 204.1 158 64.6
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.3e-50 203.0 208 52.9
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 6.7e-50 201.4 172 61.0
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.1e-49 200.7 191 56.5
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.1e-49 200.7 135 72.6
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.1e-49 200.7 150 65.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.3e-49 198.7 145 71.7
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 5.7e-49 198.4 124 77.4
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.3e-48 197.2 117 76.1
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.3e-48 197.2 160 61.9
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.8e-48 196.1 205 55.1
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 2.8e-48 196.1 154 64.3
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 2.8e-48 196.1 114 78.9
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 4.8e-48 195.3 127 72.4
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 4.8e-48 195.3 154 64.3
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.1e-47 194.1 201 52.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.4e-47 193.7 205 54.6
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 3.1e-47 192.6 129 71.3
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 7.7e-46 188.0 187 56.7
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.2e-45 186.4 159 61.6
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 5.0e-45 185.3 203 50.7
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.4e-44 183.7 114 71.9
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 1.6e-43 180.3 153 60.1
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.1e-39 167.5 104 74.0
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.4e-39 167.2 121 66.9
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.4e-39 167.2 121 66.9
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.2e-37 159.8 123 62.6
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 4.2e-36 155.6 120 58.3
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.6e-35 153.7 137 56.9
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 4.7e-35 152.1 121 57.0
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.1e-35 151.8 113 61.1
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.0e-34 151.0 148 52.0
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.4e-34 150.6 134 56.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.0e-34 149.4 126 55.6
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.6e-33 146.4 139 51.8
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.6e-33 146.4 138 52.2
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 3.3e-33 146.0 129 55.0
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 4.4e-33 145.6 128 51.6
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 4.4e-33 145.6 107 59.8
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 4.4e-33 145.6 105 62.9
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.7e-33 145.2 156 48.1
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.3e-32 144.1 111 58.6
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.7e-32 143.7 128 56.2
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 2.2e-32 143.3 107 59.8
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 3.7e-32 142.5 122 54.1
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 6.3e-32 141.7 134 52.2
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 6.3e-32 141.7 106 60.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 8.2e-32 141.4 107 58.9
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 8.2e-32 141.4 171 45.6
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 1.4e-31 140.6 159 45.9
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.8e-31 140.2 119 54.6
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.8e-31 140.2 108 57.4
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.4e-31 139.8 114 57.0
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.4e-31 139.8 132 50.8
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.4e-31 139.8 149 47.7
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.0e-31 138.3 114 56.1
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 7.0e-31 138.3 136 49.3
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.2e-30 137.5 131 55.0
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 2.7e-30 136.3 141 48.9
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 5.9e-30 135.2 172 44.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 7.7e-30 134.8 107 57.9
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.0e-29 134.4 108 53.7
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.0e-29 134.4 121 53.7
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.3e-29 134.0 111 54.1
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.7e-29 133.7 110 54.5
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.7e-29 133.7 99 62.6
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.2e-29 133.3 110 57.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.2e-29 133.3 151 45.0
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 6.5e-29 131.7 110 53.6
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.5e-29 131.7 110 53.6
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.5e-29 131.3 110 54.5
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.1e-28 131.0 135 44.4
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.9e-28 130.2 115 52.2
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 5.5e-28 128.6 134 48.5
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.2e-28 128.3 110 52.7
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 2.1e-27 126.7 132 47.7
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.7e-27 126.3 173 41.0
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 2.7e-27 126.3 64 85.9
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.6e-27 125.9 107 57.9
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.0e-26 124.4 125 46.4
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.0e-26 124.4 132 49.2
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.3e-26 123.2 88 63.6
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.3e-26 123.2 151 43.0
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 8.8e-26 121.3 61 86.9
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.0e-25 120.2 126 46.0
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.6e-25 119.8 110 48.2
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.8e-23 113.6 115 48.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.8e-23 113.6 115 48.7
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 2.0e-22 110.2 60 78.3
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.3e-21 107.5 222 32.9
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.7e-21 107.1 161 44.7
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.9e-21 106.3 67 68.7
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 1.1e-20 104.4 145 41.4
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 2.5e-20 103.2 98 50.0
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.2e-20 102.8 155 41.3
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 6.1e-19 98.6 245 29.8
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.1e-15 87.8 61 62.3
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 2.7e-14 83.2 51 66.7
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 4.7e-11 72.4 77 48.1
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 3.0e-10 69.7 47 61.7
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 6.8e-10 68.6 98 35.7
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 2.0e-09 67.0 63 47.6
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 5.7e-09 65.5 47 59.6
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.1e-07 61.2 47 53.2
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 1.1e-07 61.2 69 49.3
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.8e-07 60.5 92 42.4
Mapoly0021s0016 Marchantia polymorpha HOM05D003884 ORTHO05D004482 5.4e-07 58.9 96 31.2
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 1.6e-06 57.4 50 50.0
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 2.0e-06 57.0 47 46.8
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 2.0e-06 57.0 43 60.5
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.7e-06 56.6 47 48.9
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.9e-06 55.5 99 34.3


User provided reference genes

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