Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 3.4e-92 341.7 171 100.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 5.5e-79 297.7 171 84.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.8e-78 295.4 171 84.2
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.8e-77 292.7 169 84.6
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.8e-74 282.7 169 81.7
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.7e-72 276.2 169 80.5
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.5e-71 272.3 169 79.3
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.5e-71 272.3 169 79.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 4.3e-71 271.6 167 79.0
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 9.5e-71 270.4 165 80.0
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.6e-70 269.6 168 76.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 3.6e-70 268.5 169 78.1
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.5e-68 263.1 169 76.3
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.0e-68 262.7 169 73.4
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.6e-68 262.3 187 70.6
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 5.8e-68 261.2 165 78.8
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 5.8e-68 261.2 167 77.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.9e-67 258.8 166 75.3
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 6.4e-67 257.7 169 74.6
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.9e-66 256.1 164 78.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.4e-66 255.8 169 75.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 4.1e-66 255.0 163 74.8
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.7e-65 252.3 165 73.9
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.3e-64 250.0 167 75.4
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.7e-64 249.6 170 73.5
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.3e-64 249.2 154 79.9
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.3e-64 249.2 154 79.9
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.0e-64 248.8 204 62.3
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 6.6e-64 247.7 164 75.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.9e-63 246.1 162 72.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.9e-63 246.1 162 71.6
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 3.3e-63 245.4 163 72.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 3.3e-63 245.4 164 72.6
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 4.3e-63 245.0 166 71.7
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 9.5e-63 243.8 162 73.5
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 9.5e-63 243.8 162 73.5
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 9.5e-63 243.8 167 72.5
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.4e-61 240.0 162 72.2
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.8e-61 239.6 163 71.8
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.2e-60 236.9 163 70.6
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.5e-60 236.5 171 68.4
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 5.8e-60 234.6 169 66.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.2e-59 232.6 166 70.5
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.9e-59 232.3 154 74.0
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.9e-59 232.3 169 71.0
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 4.9e-59 231.5 154 74.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.1e-58 230.3 166 69.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.9e-58 229.6 171 67.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.9e-58 229.6 162 67.9
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 5.4e-58 228.0 162 67.3
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 7.1e-58 227.6 166 68.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.2e-57 226.9 165 68.5
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.2e-57 226.9 163 65.6
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.6e-57 226.5 162 66.7
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.1e-57 226.1 165 66.7
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.7e-57 225.7 170 65.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 3.5e-57 225.3 150 73.3
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 3.5e-57 225.3 180 61.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 6.0e-57 224.6 169 66.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 7.8e-57 224.2 167 68.3
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 2.3e-56 222.6 168 63.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 3.9e-56 221.9 169 66.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.5e-55 219.9 168 65.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 5.6e-55 218.0 167 65.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 7.3e-55 217.6 164 70.1
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.6e-54 216.5 166 65.1
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.8e-54 215.7 129 81.4
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 4.0e-53 211.8 154 68.2
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.5e-52 209.9 166 63.3
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 2.0e-52 209.5 163 67.5
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 62.4
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 62.4
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.9e-50 203.0 162 63.0
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.9e-50 203.0 162 63.0
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.9e-50 203.0 162 63.0
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.4e-50 202.6 169 59.8
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 2.4e-50 202.6 169 59.8
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 7.1e-50 201.1 169 60.9
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.2e-50 200.7 166 62.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 9.2e-50 200.7 169 59.8
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.7e-49 199.1 170 60.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.5e-49 198.7 166 60.2
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.6e-49 198.4 163 62.6
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.0e-48 197.2 169 59.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.3e-48 196.8 152 69.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.3e-48 196.8 169 59.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.7e-48 196.4 166 57.8
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.0e-48 195.7 163 62.0
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 6.6e-48 194.5 163 58.9
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.9e-47 193.0 167 60.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 3.3e-47 192.2 165 61.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 3.3e-47 192.2 165 61.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.6e-46 189.9 167 58.7
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.6e-46 189.9 124 75.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 3.1e-45 185.7 170 55.9
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 7.6e-44 181.0 167 58.1
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 4.6e-41 171.8 114 72.8
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.3e-40 170.2 167 56.3
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 6.9e-37 157.9 183 48.1
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 2.6e-36 156.0 183 48.6
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-34 150.2 165 48.5
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.2e-34 148.7 167 44.3
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-32 142.5 179 42.5
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-28 130.2 177 44.6
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-28 127.9 177 45.2
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 6.4e-27 124.8 108 55.6
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 5.4e-26 121.7 112 58.9
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-25 119.4 165 45.5
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-25 118.6 176 45.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 7.9e-25 117.9 180 40.0
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-24 116.7 188 36.2
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 2.5e-23 112.8 116 52.6
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 9.6e-23 110.9 178 36.5
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 2.8e-22 109.4 70 75.7
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-22 109.0 187 38.0
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-22 107.8 170 40.6
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.1e-21 107.5 74 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.2e-20 104.0 137 39.4
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 3.4e-20 102.4 108 54.6
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-20 101.7 167 35.9
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 7.6e-20 101.3 75 68.0
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.2e-19 99.8 142 39.4
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-19 98.6 172 38.4
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 9.3e-18 94.4 71 70.4
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-17 93.6 132 41.7
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-17 92.4 164 32.3
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-17 92.0 136 39.0
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-15 87.4 164 31.7
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.1e-15 87.4 138 37.7
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.1e-14 83.2 173 35.3
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-14 82.4 166 31.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-14 82.4 179 32.4
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.2e-14 81.3 153 31.4
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-13 80.9 159 34.0
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 167 31.1
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.8e-13 80.1 108 42.6
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-13 79.0 161 31.7
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-13 79.0 111 45.0
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 183 30.6
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-12 76.6 179 29.6
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-12 75.5 172 31.4
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.0e-11 74.3 45 80.0
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-11 73.9 126 38.1
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-11 73.2 167 29.9
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-11 72.4 131 32.1
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-11 72.4 147 34.0
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 185 30.3
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 2.1e-09 66.6 63 47.6
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 127 29.9
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 8.7e-08 61.2 132 30.3
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-07 60.8 126 31.0
Ah.12g060480 Amaranthus hybridus HOM05D002606 ORTHO05D015240 3.7e-06 55.8 57 50.9


User provided reference genes

Program Settings