Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.2e-130 468.0 230 100.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.5e-114 414.5 230 89.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-99 366.7 230 79.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-97 359.8 192 90.1
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.0e-91 338.2 220 78.2
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.3e-88 329.3 230 70.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 8.8e-88 327.4 226 70.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.7e-86 322.0 230 68.7
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 5.0e-83 311.6 230 64.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 6.1e-81 304.7 226 64.6
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.0e-80 303.9 230 63.5
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 9.7e-79 297.4 230 62.6
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 9.7e-79 297.4 227 62.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.8e-78 295.8 230 62.6
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 6.3e-78 294.7 230 63.9
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.4e-77 293.5 226 62.4
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 1.4e-77 293.5 230 63.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.4e-77 292.7 230 63.0
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.3e-77 291.6 230 63.5
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 7.0e-77 291.2 230 63.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.2e-76 290.4 230 63.0
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.2e-76 290.4 230 63.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 2.7e-76 289.3 227 61.2
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.7e-76 289.3 223 63.2
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 3.5e-76 288.9 230 62.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 5.9e-76 288.1 228 63.2
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.7e-75 286.6 225 62.7
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.9e-75 285.8 227 59.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.8e-75 285.4 225 61.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.1e-74 283.9 230 61.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.9e-74 283.1 221 62.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.9e-74 283.1 227 58.1
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.5e-74 282.7 228 57.9
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.2e-74 282.3 230 60.4
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.5e-74 281.6 231 61.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 5.5e-74 281.6 227 59.5
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.2e-73 280.4 230 60.9
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.7e-73 278.5 227 60.4
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 6.1e-73 278.1 227 59.9
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.0e-72 277.3 229 59.0
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.0e-72 275.4 230 60.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 6.8e-72 274.6 227 59.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 8.8e-72 274.2 229 58.5
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.5e-71 273.5 225 59.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 2.0e-71 273.1 226 59.7
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.4e-71 272.3 230 57.8
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-70 270.0 230 58.7
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 6.3e-70 268.1 230 57.0
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 8.3e-70 267.7 231 56.7
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.8e-69 266.5 227 61.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.4e-69 266.2 230 57.8
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 5.4e-69 265.0 230 59.6
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 2.7e-68 262.7 230 58.3
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.5e-68 261.9 227 56.8
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 7.7e-68 261.2 227 59.0
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.0e-67 260.8 227 55.1
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.9e-67 259.2 227 56.8
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.9e-67 259.2 227 59.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.9e-67 259.2 227 59.0
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.9e-67 259.2 228 58.3
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.9e-67 259.2 227 55.5
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 6.6e-67 258.1 228 58.3
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.6e-67 257.7 227 59.0
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.6e-67 257.7 227 58.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-66 257.3 228 57.5
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.5e-66 256.9 230 57.8
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 9.5e-66 254.2 228 56.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.8e-65 252.7 226 58.4
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.0e-63 246.5 230 53.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-63 246.1 226 61.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 228 54.4
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.8e-61 240.0 224 55.4
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.4e-61 239.6 209 57.4
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.1e-61 239.2 227 53.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.0e-61 238.0 205 57.6
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.0e-59 234.2 201 58.2
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.7e-59 233.4 220 52.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.5e-58 230.3 227 51.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.3e-58 228.8 227 50.7
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 7.3e-58 228.0 226 51.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 7.3e-58 228.0 227 51.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 9.5e-58 227.6 227 52.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.2e-57 227.3 227 50.7
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.6e-57 226.9 227 51.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.6e-57 226.9 229 52.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-57 226.5 227 51.5
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.8e-57 226.1 227 51.1
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.6e-57 225.7 227 51.5
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.1e-56 222.6 227 51.5
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 3.1e-56 222.6 223 51.1
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 5.2e-56 221.9 227 51.5
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.0e-55 219.9 231 57.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.4e-55 218.8 231 56.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 7.5e-55 218.0 228 51.8
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.2e-54 216.5 221 50.7
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.2e-52 210.7 227 48.5
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 4.6e-52 208.8 227 48.5
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.0e-52 208.4 227 48.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.7e-51 206.8 222 50.9
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.0e-51 206.1 247 43.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.5e-50 203.8 237 45.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 2.1e-49 199.9 237 44.3
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.6e-49 199.1 230 44.8
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 4.7e-49 198.7 144 66.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 5.8e-47 191.8 223 47.1
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-44 183.7 250 40.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.3e-43 179.9 238 41.2
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.3e-42 175.6 250 40.8
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.2e-41 174.1 227 43.6
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.6e-41 172.6 225 41.3
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 4.7e-41 172.2 261 39.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.1e-41 171.4 248 41.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.3e-40 169.9 224 37.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 8.9e-40 167.9 230 37.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-39 167.5 232 39.7
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.4e-39 166.0 225 37.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.4e-39 165.6 225 41.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.8e-39 165.2 225 41.3
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.2e-38 163.3 231 39.0
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 1.1e-37 161.0 225 38.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.2e-37 159.5 229 38.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.6e-36 157.1 255 36.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 7.8e-36 154.8 259 35.1
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.9e-35 152.5 260 35.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.6e-35 151.8 260 35.4
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 8.6e-35 151.4 232 38.8
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.6e-33 146.0 173 44.5
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.6e-33 146.0 173 44.5
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.2e-33 145.2 254 35.0
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.1e-33 144.8 152 50.7
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.8e-32 143.7 232 36.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.2e-31 141.0 229 35.8
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.8e-30 136.0 162 43.2
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.9e-30 135.6 215 35.3
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.9e-30 135.6 139 48.2
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.9e-29 133.7 154 45.5
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.2e-29 132.9 161 42.9
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 4.2e-29 132.5 255 35.3
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.2e-29 132.5 151 45.0
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 9.2e-29 131.3 216 36.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.1e-28 130.2 221 37.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.6e-28 129.0 210 33.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.3e-27 127.5 228 34.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-26 124.0 134 48.5
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.6e-26 121.3 134 47.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.1e-25 120.2 141 46.8
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.4e-24 116.7 132 46.2
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.4e-24 116.7 130 47.7
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.5e-23 114.0 207 33.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.2e-22 110.2 106 50.9
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.1e-20 103.6 147 38.8
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.7e-20 103.2 121 47.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.5e-20 102.8 130 41.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.7e-19 100.5 140 39.3
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 8.7e-19 98.2 140 36.4
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.3e-18 95.1 224 28.6
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.9e-16 88.6 190 27.9
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.9e-16 88.6 222 31.1
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.4e-14 82.0 83 48.2
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-12 77.0 159 32.1
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-11 72.4 95 37.9
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-09 67.0 169 29.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.4e-08 63.5 245 26.1
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.4e-07 59.7 62 43.5


User provided reference genes

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