Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 9.7e-166 586.6 277 100.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.6e-131 473.0 353 68.8
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.8e-130 468.4 353 68.3
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.6e-128 461.8 351 66.4
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 7.5e-126 454.1 340 67.9
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.0e-122 443.7 352 63.9
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 3.3e-121 438.7 353 63.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 9.5e-121 437.2 353 62.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 2.1e-120 436.0 353 62.3
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 2.8e-120 435.6 353 62.6
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 4.7e-120 434.9 353 62.3
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 5.2e-119 431.4 351 59.8
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.2e-119 431.4 353 62.0
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 6.8e-119 431.0 353 61.5
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.2e-118 430.3 353 61.5
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 2.6e-118 429.1 352 61.1
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 5.8e-118 427.9 353 60.9
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.8e-118 427.9 353 62.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 7.5e-118 427.6 353 60.9
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.7e-117 426.4 353 60.9
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.2e-117 426.0 362 60.8
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.2e-117 426.0 353 62.0
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 2.2e-117 426.0 352 61.4
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.9e-117 425.6 356 60.7
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.1e-116 423.7 352 61.1
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.4e-116 423.3 351 60.4
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.9e-116 422.9 353 59.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.9e-116 422.9 352 60.8
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.1e-116 421.8 351 60.4
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 4.1e-116 421.8 375 60.8
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 9.2e-116 420.6 352 60.8
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.2e-115 420.2 354 60.7
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.7e-115 419.1 351 60.1
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.5e-115 418.7 353 60.3
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 3.5e-115 418.7 353 60.1
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.0e-114 417.2 351 59.5
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.0e-114 417.2 353 60.9
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 3.0e-114 415.6 352 60.5
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 3.3e-113 412.1 353 59.2
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.3e-113 411.8 340 62.1
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 4.3e-113 411.8 353 58.6
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 5.6e-113 411.4 351 59.0
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 9.5e-113 410.6 339 62.2
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 9.5e-113 410.6 353 59.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.1e-112 409.5 352 59.4
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 2.1e-112 409.5 354 59.6
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 2.8e-112 409.1 353 60.1
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-112 408.7 351 58.7
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 3.6e-112 408.7 351 58.7
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 8.1e-112 407.5 353 58.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 8.1e-112 407.5 353 58.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.8e-111 406.4 353 59.5
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.8e-111 406.4 320 65.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 6.8e-111 404.4 340 60.6
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.8e-111 404.4 353 59.2
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 8.9e-111 404.1 353 58.4
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 8.9e-111 404.1 353 58.4
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 8.9e-111 404.1 353 59.5
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-110 403.7 351 58.4
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.5e-110 403.3 348 58.6
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.5e-110 403.3 346 60.4
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 3.4e-110 402.1 351 58.7
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.4e-110 402.1 353 59.2
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.4e-110 402.1 353 59.2
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 7.5e-110 401.0 353 58.1
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.3e-109 400.2 353 56.9
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.2e-109 399.4 340 60.0
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.9e-109 399.1 353 57.8
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.7e-109 398.7 353 57.8
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-109 398.7 357 57.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 4.9e-109 398.3 353 58.4
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 6.4e-109 397.9 339 59.9
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 6.4e-109 397.9 354 58.2
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 6.4e-109 397.9 353 58.1
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 8.3e-109 397.5 353 57.5
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.4e-108 396.0 353 57.2
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 4.1e-108 395.2 340 60.0
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.6e-107 393.3 353 56.9
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 2.1e-107 392.9 352 58.0
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.0e-106 390.6 353 56.9
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 8.1e-104 380.9 353 56.1
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.3e-103 379.4 355 56.1
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 4.0e-103 378.6 320 60.3
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 8.9e-103 377.5 352 56.8
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 2.6e-102 375.9 353 55.2
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 3.4e-102 375.6 353 53.8
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 9.9e-102 374.0 353 55.2
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 3.7e-101 372.1 353 55.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.4e-100 370.2 353 54.7
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.0e-98 364.0 347 55.9
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 8.6e-98 360.9 339 56.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 4.3e-97 358.6 409 47.9
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.2e-94 350.5 339 51.6
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 5.8e-94 348.2 403 48.9
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.7e-93 346.7 320 56.9
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.2e-92 342.4 354 50.0
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.1e-91 339.7 322 55.9
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 4.6e-91 338.6 354 48.6
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 6.0e-91 338.2 354 49.4
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.4e-87 326.2 294 57.5
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-86 323.9 296 56.4
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.6e-86 322.8 298 55.7
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.6e-86 322.8 298 55.7
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.0e-82 310.8 320 52.2
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 2.5e-81 306.2 297 54.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-80 302.4 307 51.8
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 5.3e-79 298.5 324 52.5
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 4.5e-78 295.4 397 43.8
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.3e-74 283.9 270 55.2
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.1e-67 260.0 256 53.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 6.0e-67 258.5 268 52.2
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.2e-60 236.1 168 71.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 9.7e-57 224.6 149 67.8
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.1e-55 221.1 168 67.3
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 9.0e-55 218.0 146 74.7
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.1e-52 211.1 194 57.2
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 2.2e-48 196.8 359 34.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 8.2e-48 194.9 126 71.4
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.4e-47 194.1 164 55.5
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.2e-46 191.0 359 32.6
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 5.0e-45 185.7 159 56.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.5e-44 182.2 109 77.1
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 9.4e-44 181.4 355 33.5
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 3.0e-42 176.4 156 60.3
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.6e-41 173.3 128 64.8
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 8.2e-40 168.3 87 88.5
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.0e-34 151.4 364 26.6
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.6e-33 146.7 166 49.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.3e-26 123.6 74 70.3
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 3.0e-26 123.2 76 75.0
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.2e-26 122.5 84 64.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.0e-18 96.3 111 49.5
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.1e-15 86.7 55 67.3
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.7e-14 83.6 43 90.7
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.6e-13 79.0 44 79.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.8e-10 70.9 54 50.0
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 8.9e-10 68.6 139 34.5
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.6e-09 67.0 48 62.5
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.4e-09 66.2 59 42.4
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 3.7e-08 63.2 144 31.2
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.4e-07 59.3 45 64.4
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.0e-06 57.4 46 54.3
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 4.6e-06 56.2 163 24.5


User provided reference genes

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