Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012834 Camellia sinensis var. sinensis HOM05D006533 ORTHO05D008625 1.8e-202 709.1 387 100.0
Actinidia34305 Actinidia chinensis HOM05D006533 ORTHO05D008625 2.0e-161 572.8 389 77.1
GSVIVG01024411001 Vitis vinifera HOM05D006533 ORTHO05D008625 3.3e-148 528.9 401 70.1
FvH4_7g33920 Fragaria vesca HOM05D006533 ORTHO05D008625 1.2e-145 520.4 395 68.4
QL09p024067 Quercus lobata HOM05D006533 ORTHO05D008625 3.5e-145 518.8 390 69.7
Manes.09G124800 Manihot esculenta HOM05D006533 ORTHO05D008625 5.9e-145 518.1 365 74.8
FAN10G3989 Fragaria x ananassa HOM05D006533 ORTHO05D008625 2.2e-144 516.2 395 67.8
CiPaw.06G033000 Carya illinoinensis HOM05D006533 ORTHO05D008625 2.5e-143 512.7 394 69.3
RcHm_v2.0_Chr1g0384131 Rosa chinensis HOM05D006533 ORTHO05D008625 2.7e-142 509.2 395 67.6
FAN03G0602 Fragaria x ananassa HOM05D006533 ORTHO05D008625 6.1e-142 508.1 395 67.6
vmacro06509 Vaccinium macrocarpon HOM05D006533 ORTHO05D008625 1.0e-141 507.3 392 70.7
Peaxi162Scf00133g00721 Petunia axillaris HOM05D006533 ORTHO05D008625 1.5e-140 503.4 362 71.0
Cc02_g00290 Coffea canephora HOM05D006533 ORTHO05D008625 8.3e-139 497.7 397 65.7
Rhsim03G0221300 Rhododendron simsii HOM05D006533 ORTHO05D008625 3.5e-137 492.3 377 70.3
Duzib264G0907 Durio zibethinus HOM05D006533 ORTHO05D008625 7.7e-137 491.1 362 71.8
Oeu060384.1 Olea europaea HOM05D006533 ORTHO05D008625 1.0e-136 490.7 392 66.6
Solyc02g094260.1 Solanum lycopersicum HOM05D006533 ORTHO05D008625 3.8e-136 488.8 391 66.2
Prupe.2G325700 Prunus persica HOM05D006533 ORTHO05D008625 5.0e-136 488.4 397 66.8
Sopen02g038900 Solanum pennellii HOM05D006533 ORTHO05D008625 6.6e-136 488.0 391 66.2
PGSC0003DMG400020249 Solanum tuberosum HOM05D006533 ORTHO05D008625 1.1e-135 487.3 390 66.4
TAR374G0999 Trochodendron aralioides HOM05D006533 ORTHO05D008625 1.1e-135 487.3 395 66.3
Hund09790 Selenicereus undatus HOM05D006533 ORTHO05D008625 1.5e-135 486.9 366 67.5
ECA232G2080 Erigeron canadensis HOM05D006533 ORTHO05D008625 3.3e-135 485.7 392 66.8
COL.COLO4_35796 Corchorus olitorius HOM05D006533 ORTHO05D008625 5.5e-135 485.0 357 70.6
CANSAT56G3916 Cannabis sativa HOM05D006533 ORTHO05D008625 7.2e-135 484.6 397 64.7
CANSAT56G1022 Cannabis sativa HOM05D006533 ORTHO05D008625 1.6e-134 483.4 397 64.5
Nn1g01934 Nelumbo nucifera HOM05D006533 ORTHO05D008625 1.0e-133 480.7 367 68.7
MD07G1308500 Malus domestica HOM05D006533 ORTHO05D008625 1.2e-132 477.2 397 66.2
Glyma.01G228300 Glycine max HOM05D006533 ORTHO05D008625 2.6e-132 476.1 395 67.3
Lj6g0021866 Lotus japonicus HOM05D006533 ORTHO05D008625 2.6e-132 476.1 395 65.6
Gorai.006G005800 Gossypium raimondii HOM05D006533 ORTHO05D008625 5.7e-132 474.9 392 65.8
Gohir.A09G004900 Gossypium hirsutum HOM05D006533 ORTHO05D008625 1.3e-131 473.8 392 65.8
Gohir.D09G004200 Gossypium hirsutum HOM05D006533 ORTHO05D008625 1.7e-131 473.4 392 65.8
Thecc.01G135900 Theobroma cacao HOM05D006533 ORTHO05D008625 2.8e-131 472.6 392 65.6
Eucgr.K00088 Eucalyptus grandis HOM05D006533 ORTHO05D008625 3.7e-131 472.2 395 65.6
Lalb_Chr09g0320221 Lupinus albus HOM05D006533 ORTHO05D008625 4.9e-131 471.9 395 65.8
MBI04_g36026_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 6.3e-131 471.5 365 67.7
Potri.013G082000 Populus trichocarpa HOM05D006533 ORTHO05D008625 6.3e-131 471.5 398 64.6
Sabra13G0070900 Salix brachista HOM05D006533 ORTHO05D008625 1.1e-130 470.7 398 64.3
Sed0002742 Sechium edule HOM05D006533 ORTHO05D008625 3.1e-130 469.2 394 62.4
Phvul.002G039600 Phaseolus vulgaris HOM05D006533 ORTHO05D008625 5.4e-130 468.4 395 65.1
AUR62002060 Chenopodium quinoa HOM05D006533 ORTHO05D008625 7.0e-130 468.0 399 64.7
Ca_24442_v3 Cicer arietinum L. HOM05D006533 ORTHO05D008625 1.2e-129 467.2 395 66.1
MELO3C006767.2 Cucumis melo HOM05D006533 ORTHO05D008625 5.9e-129 464.9 378 64.0
MSTRG.8576 Avicennia marina HOM05D006533 ORTHO05D008625 1.7e-128 463.4 391 62.4
Atru.chr1.2781 Acer truncatum HOM05D006533 ORTHO05D008625 2.3e-128 463.0 395 65.3
Lj3A887G72 Lonicera japonica HOM05D006533 ORTHO05D008625 3.8e-128 462.2 395 64.3
Glyma.11G011100 Glycine max HOM05D006533 ORTHO05D008625 1.1e-127 460.7 395 65.6
SalBow4G2334 Salvia bowleyana HOM05D006533 ORTHO05D008625 1.1e-127 460.7 363 64.7
Migut.F00098 Erythranthe guttata HOM05D006533 ORTHO05D008625 1.5e-127 460.3 393 62.6
ClCG05G007010 Citrullus lanatus HOM05D006533 ORTHO05D008625 3.3e-127 459.1 394 61.4
AUR62028174 Chenopodium quinoa HOM05D006533 ORTHO05D008625 5.6e-127 458.4 399 63.4
SGA_v2.0_scaffold18G08508 Striga asiatica HOM05D006533 ORTHO05D008625 7.3e-127 458.0 393 60.8
Ciclev10020455m.g Citrus clementina HOM05D006533 ORTHO05D008625 9.5e-127 457.6 401 64.1
CsaV3_3G015700 Cucumis sativus L. HOM05D006533 ORTHO05D008625 3.6e-126 455.7 394 61.4
arahy.Tifrunner.gnm1.ann1.NII7HE Arachis hypogaea HOM05D006533 ORTHO05D008625 4.7e-126 455.3 395 62.8
Lsat_1_v5_gn_9_47461 Lactuca sativa HOM05D006533 ORTHO05D008625 1.4e-125 453.8 392 63.3
Psat2g188880 Pisum sativum HOM05D006533 ORTHO05D008625 1.8e-125 453.4 393 64.1
EL10Ac3g05080 Beta vulgaris HOM05D006533 ORTHO05D008625 5.2e-125 451.8 420 59.5
Medtr5g007700 Medicago truncatula HOM05D006533 ORTHO05D008625 5.2e-125 451.8 395 64.3
Cpa.g.sc39.72 Carica papaya HOM05D006533 ORTHO05D008625 7.5e-124 448.0 369 66.1
arahy.Tifrunner.gnm1.ann1.YJZS8S Arachis hypogaea HOM05D006533 ORTHO05D008625 4.9e-123 445.3 421 58.7
Hma1.2p1_3802F.1_g337635 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 4.9e-123 445.3 337 70.6
Cfa006012 Carpinus fangiana HOM05D006533 ORTHO05D008625 8.3e-123 444.5 396 63.9
Nitab4.5_0001510g0030 Nicotiana tabacum HOM05D006533 ORTHO05D008625 1.6e-121 440.3 417 59.2
Dinv17259 Davidia involucrata HOM05D006533 ORTHO05D008625 6.0e-121 438.3 312 76.3
VMungo1215G1087 Vigna mungo HOM05D006533 ORTHO05D008625 1.0e-120 437.6 371 64.4
PGR142G1840 Punica granatum HOM05D006533 ORTHO05D008625 1.1e-119 434.1 395 60.5
Ah.04g156530 Amaranthus hybridus HOM05D006533 ORTHO05D008625 7.3e-119 431.4 374 62.6
Sc06g0002540 Simmondsia chinensis HOM05D006533 ORTHO05D008625 1.6e-118 430.3 393 59.5
PSO063G2320 Papaver somniferum HOM05D006533 ORTHO05D008625 2.8e-118 429.5 391 59.3
THA.LOC104820882 Tarenaya hassleriana HOM05D006533 ORTHO05D008625 2.8e-118 429.5 392 59.9
HanXRQChr05g0141721 Helianthus annuus HOM05D006533 ORTHO05D008625 4.0e-117 425.6 392 60.2
CARHR196200 Cardamine hirsuta HOM05D006533 ORTHO05D008625 1.2e-116 424.1 392 58.2
Hma1.2p1_0758F.1_g213747 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 1.2e-116 424.1 301 74.8
CAN.G473.117 Capsicum annuum HOM05D006533 ORTHO05D008625 1.5e-116 423.7 343 66.5
Aa31LG11G12640 Aethionema arabicum HOM05D006533 ORTHO05D008625 2.0e-116 423.3 392 59.2
AL6G27960 Arabidopsis lyrata HOM05D006533 ORTHO05D008625 2.6e-116 422.9 392 58.9
Aqoxy3G02101 Aquilegia oxysepala HOM05D006533 ORTHO05D008625 3.7e-115 419.1 390 57.4
Sabra06G0125800 Salix brachista HOM05D006533 ORTHO05D008625 6.4e-115 418.3 398 59.0
Nitab4.5_0005342g0010 Nicotiana tabacum HOM05D006533 ORTHO05D008625 8.3e-115 417.9 442 54.8
Hma1.2p1_0758F.1_g213741 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 1.9e-114 416.8 308 72.4
Hma1.2p1_0758F.1_g213730 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.2e-114 416.0 310 71.9
Hma1.2p1_0758F.1_g213704 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 6.0e-113 411.8 269 79.9
Hma1.2p1_0758F.1_g213725 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 1.1e-111 407.5 269 79.2
Hma1.2p1_0758F.1_g213746 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 1.1e-111 407.5 269 79.2
Hma1.2p1_3802F.1_g337637 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 1.1e-111 407.5 269 79.2
Medtr5g061700 Medicago truncatula HOM05D006533 ORTHO05D008625 7.3e-111 404.8 397 58.2
LjContig00222g0024674 Lotus japonicus HOM05D006533 ORTHO05D008625 1.6e-110 403.7 345 64.3
unitig_0.g2430 Utricularia gibba HOM05D006533 ORTHO05D008625 6.8e-109 398.3 391 55.2
DCAR_009009 Daucus carota HOM05D006533 ORTHO05D008625 1.2e-108 397.5 336 66.7
PSO782G0079 Papaver somniferum HOM05D006533 ORTHO05D008625 2.6e-108 396.4 367 58.3
SalBow4G1971 Salvia bowleyana HOM05D006533 ORTHO05D008625 7.5e-108 394.8 313 65.2
HPP92_005443 Vanilla planifolia HOM05D006533 ORTHO05D008625 2.1e-105 386.7 391 54.2
ATR0829G094 Amborella trichopoda HOM05D006533 ORTHO05D008625 4.2e-98 362.5 412 51.9
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 5.4e-90 335.5 349 54.7
Os06g0114600 Oryza sativa ssp. japonica HOM05D006533 ORTHO05D008625 7.1e-90 335.1 355 51.0
Mapoly0015s0191 Marchantia polymorpha HOM05D006533 ORTHO05D008625 5.1e-80 302.4 450 42.4
SMO340G0278 Selaginella moellendorffii HOM05D006533 ORTHO05D008625 2.1e-78 297.0 402 43.5
Zm00001eb268960 Zea mays HOM05D006533 ORTHO05D008625 1.8e-77 293.9 326 49.7
TPR.G22023 Trifolium pratense HOM05D006533 ORTHO05D008625 1.3e-75 287.7 175 84.6
Pp3c15_5730 Physcomitrium patens HOM05D006533 ORTHO05D008625 5.5e-74 282.3 420 41.7
QL09p024429 Quercus lobata HOM05D006533 ORTHO05D008625 7.4e-71 271.9 286 57.7
Psat2g075360 Pisum sativum HOM05D006533 ORTHO05D008625 1.6e-70 270.8 298 55.0
arahy.Tifrunner.gnm1.ann1.1W8L1U Arachis hypogaea HOM05D006533 ORTHO05D008625 3.4e-60 236.5 161 74.5
SEGI_31434 Sequoiadendron giganteum HOM05D006533 ORTHO05D008625 4.2e-58 229.6 180 67.8
TPR.G37965 Trifolium pratense HOM05D006533 ORTHO05D008625 1.4e-56 224.6 273 50.5
CBR_g24301 Chara braunii HOM05D006533 ORTHO05D008625 2.2e-43 180.6 580 27.9
HPP92_005432 Vanilla planifolia HOM05D006533 ORTHO05D008625 2.4e-37 160.6 175 49.1
FAN01G0029 Fragaria x ananassa HOM05D006533 ORTHO05D008625 2.0e-31 141.0 85 77.6
MBI06_g38701_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 2.6e-31 140.6 133 55.6
SEGI_03149 Sequoiadendron giganteum HOM05D006533 ORTHO05D008625 2.4e-29 134.0 209 39.7
MBI12_g01582_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 1.2e-20 105.1 145 45.5
Hma1.2p1_0649F.1_g195356 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.5e-12 77.0 57 71.9
Hma1.2p1_0649F.1_g195390 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.5e-12 77.0 57 71.9
Hma1.2p1_3802F.1_g337632 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.5e-12 77.0 57 71.9
MBI06_g38702_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 2.3e-11 74.3 94 47.9
Rhsim12G0119200 Rhododendron simsii HOM05D006533 ORTHO05D338813 7.3e-10 69.3 59 62.7
MBI05_g26894_MAGBIO Magnolia biondii HOM05D003110 ORTHO05D003585 1.6e-09 68.2 47 68.1
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 8.3e-06 55.8 93 41.9


User provided reference genes

Program Settings