Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 7.3e-135 483.8 230 100.0
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 5.5e-114 414.5 226 84.5
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.1e-111 406.8 227 83.3
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.1e-109 400.2 228 82.0
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.1e-109 400.2 226 80.5
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 2.2e-107 392.5 227 78.9
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.2e-105 386.7 226 79.6
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.7e-105 385.6 229 77.3
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 6.7e-104 380.9 226 77.9
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 8.8e-104 380.6 225 76.0
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 1.9e-103 379.4 225 76.4
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 4.3e-103 378.3 226 78.8
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 4.3e-103 378.3 226 76.5
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 5.7e-103 377.9 229 76.9
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 1.3e-102 376.7 226 76.1
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.3e-102 376.7 226 76.5
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.7e-102 376.3 226 75.2
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 3.7e-102 375.2 225 75.6
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 6.3e-102 374.4 226 75.2
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 6.3e-102 374.4 229 76.4
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 1.1e-101 373.6 224 74.6
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 1.1e-101 373.6 229 76.0
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 1.4e-101 373.2 229 76.4
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.8e-101 372.9 226 75.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 4.1e-101 371.7 227 74.4
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 5.3e-101 371.3 230 74.3
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 5.3e-101 371.3 230 76.1
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 5.3e-101 371.3 225 75.1
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 6.9e-101 370.9 223 78.5
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.2e-100 370.2 226 73.9
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.2e-100 370.2 228 74.1
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.2e-100 370.2 226 74.8
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 2.0e-100 369.4 227 76.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 3.4e-100 368.6 226 76.1
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 4.5e-100 368.2 226 73.9
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 5.9e-100 367.9 225 74.2
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 7.7e-100 367.5 224 73.7
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 7.7e-100 367.5 227 73.1
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.0e-99 367.1 225 72.9
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.9e-99 365.5 229 73.4
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 3.8e-99 365.2 245 69.4
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 3.8e-99 365.2 226 73.9
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.5e-99 364.4 229 72.9
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.1e-98 363.6 279 64.5
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.4e-98 363.2 225 73.3
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 4.2e-98 361.7 229 73.4
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 7.2e-98 360.9 256 68.4
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 9.4e-98 360.5 225 72.9
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.6e-97 359.8 228 72.4
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 2.1e-97 359.4 225 72.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.7e-97 359.0 226 72.1
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.7e-97 359.0 233 71.7
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.7e-97 359.0 225 72.4
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.1e-97 357.8 225 72.4
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 6.7e-96 354.4 226 71.2
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.5e-95 353.2 236 70.8
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 5.7e-95 351.3 226 71.7
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 5.7e-95 351.3 227 70.5
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 2.2e-94 349.4 227 71.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.2e-94 349.4 225 71.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.2e-94 349.4 225 71.1
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 8.2e-94 347.4 232 69.0
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.8e-93 346.3 226 75.2
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.4e-93 345.9 231 71.0
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 2.4e-93 345.9 226 71.2
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 2.4e-93 345.9 226 71.2
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 3.1e-93 345.5 231 70.1
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 4.1e-93 345.1 227 70.0
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 5.3e-93 344.7 226 71.2
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 5.3e-93 344.7 228 70.6
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 5.3e-93 344.7 225 70.2
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 5.3e-93 344.7 238 66.4
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 9.1e-93 344.0 227 71.4
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 1.2e-92 343.6 230 69.6
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.5e-92 343.2 231 70.1
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.5e-92 343.2 228 71.9
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 3.5e-92 342.0 232 69.0
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 3.5e-92 342.0 232 69.0
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 3.5e-92 342.0 225 68.9
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 7.7e-92 340.9 230 69.6
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 2.2e-91 339.3 231 69.3
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 2.2e-91 339.3 227 70.5
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 3.8e-91 338.6 228 69.7
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.4e-90 336.7 221 71.0
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 4.2e-90 335.1 204 77.9
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 2.7e-89 332.4 227 68.7
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 8.0e-89 330.9 225 66.2
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 3.3e-87 325.5 211 73.0
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 9.1e-85 317.4 228 64.5
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 1.9e-82 309.7 226 62.4
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 2.1e-81 306.2 227 59.9
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.0e-80 303.9 226 64.6
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 4.0e-80 302.0 181 76.2
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 5.7e-79 298.1 232 64.7
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 2.2e-78 296.2 231 60.2
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 8.2e-78 294.3 188 71.8
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 3.1e-77 292.4 166 81.9
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 7.0e-77 291.2 226 59.3
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 2.2e-75 286.2 225 59.1
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 2.5e-74 282.7 197 67.5
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 5.5e-74 281.6 233 61.8
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 8.3e-70 267.7 238 52.5
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.3e-62 243.8 177 64.4
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.8e-62 242.7 225 46.7
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.9e-62 241.9 226 47.8
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 8.3e-62 241.1 225 47.1
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.2e-57 227.3 194 57.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 8.3e-54 214.5 236 48.3
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 5.4e-53 211.8 225 50.7
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.0e-52 209.9 122 76.2
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 3.6e-49 199.1 137 66.4
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 6.2e-49 198.4 225 43.6
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.4e-29 132.1 96 63.5
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.5e-26 123.2 90 66.7
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 3.3e-26 122.9 207 35.3
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.3e-22 110.9 64 81.2
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 4.2e-21 105.9 62 79.0
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.2e-20 104.4 67 68.7
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.1e-18 97.8 63 73.0
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 3.3e-18 96.3 83 56.6
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.2e-15 87.8 63 60.3
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.7e-14 84.0 45 80.0
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 3.2e-13 79.7 51 68.6
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 2.1e-12 77.0 53 62.3
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.0e-06 58.2 44 68.2


User provided reference genes

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