Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-219 764.6 374 100.0
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.9e-202 708.0 431 84.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 6.7e-162 574.3 434 70.0
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 5.7e-161 571.2 436 68.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 8.2e-160 567.4 436 69.5
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.8e-159 566.2 436 68.8
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 2.2e-157 559.3 435 68.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.1e-156 557.0 440 67.7
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.2e-156 555.1 433 68.4
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 4.4e-153 545.0 436 66.1
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 5.7e-153 544.7 436 66.1
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.7e-152 543.1 436 65.1
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 7.0e-151 537.7 436 65.1
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 2.6e-150 535.8 435 63.9
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.3e-149 533.5 436 64.7
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 2.2e-149 532.7 436 63.5
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.2e-149 532.7 435 64.1
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 1.1e-148 530.4 437 64.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.5e-148 530.0 436 64.4
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.5e-148 529.3 436 64.0
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 8.0e-147 524.2 444 62.4
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.4e-146 523.5 435 63.0
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 4.0e-146 521.9 436 62.8
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.0e-146 521.9 437 64.1
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.2e-145 520.4 435 63.9
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.6e-145 519.2 436 62.8
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 5.7e-145 518.1 433 63.3
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.7e-144 515.4 437 62.5
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 6.3e-144 514.6 435 62.3
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 4.1e-143 511.9 456 59.6
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 4.1e-143 511.9 435 62.1
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 5.3e-143 511.5 430 63.7
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.2e-142 510.4 437 62.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.6e-142 510.0 436 61.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.5e-142 508.4 403 67.2
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 5.9e-142 508.1 435 61.4
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.2e-141 506.1 435 61.1
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 4.2e-140 501.9 437 60.2
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 4.7e-139 498.4 400 64.8
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.8e-138 496.5 435 59.3
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 3.0e-138 495.7 434 60.4
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 4.0e-138 495.4 436 59.2
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 7.5e-137 491.1 437 60.0
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.3e-136 490.3 436 59.9
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.7e-136 490.0 435 59.8
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.8e-135 486.5 456 57.5
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 7.0e-135 484.6 434 58.3
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.0e-133 480.7 453 57.0
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.3e-133 480.3 421 60.1
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.7e-133 479.9 435 57.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.9e-133 479.2 435 57.9
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.8e-133 478.8 434 59.9
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.2e-132 475.3 443 57.1
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 5.5e-132 474.9 416 58.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 5.5e-132 474.9 443 57.1
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.6e-131 473.4 456 56.4
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 8.9e-130 467.6 436 57.8
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.6e-129 466.1 435 56.3
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 4.4e-129 465.3 436 57.3
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.7e-129 464.9 398 63.3
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 2.2e-128 463.0 449 56.8
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 3.7e-128 462.2 433 56.6
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 4.9e-128 461.8 436 56.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 6.3e-128 461.5 439 57.6
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 6.3e-128 461.5 435 55.9
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 2.4e-127 459.5 487 52.8
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.4e-127 459.5 433 56.4
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 2.9e-125 452.6 436 56.2
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.5e-124 450.3 475 52.8
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.3e-124 449.1 455 53.2
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 3.3e-124 449.1 436 56.0
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 3.3e-124 449.1 439 55.6
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.3e-124 448.7 403 59.1
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.2e-123 447.2 405 58.0
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 2.8e-123 446.0 436 55.5
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 2.8e-123 446.0 436 55.5
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.3e-122 443.0 433 55.9
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 5.2e-122 441.8 441 53.3
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.2e-121 440.7 402 57.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 5.8e-121 438.3 436 55.0
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 8.3e-120 434.5 427 55.3
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.4e-119 433.0 416 56.7
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.0e-118 429.9 437 53.1
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 3.5e-118 429.1 418 55.0
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 7.8e-118 427.9 383 60.3
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.7e-117 426.8 436 52.5
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 4.3e-116 422.2 436 52.5
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.3e-116 422.2 379 60.7
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.2e-115 420.6 511 48.9
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.1e-114 416.0 399 58.1
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 4.0e-114 415.6 436 51.8
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 6.8e-114 414.8 438 52.3
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.4e-113 412.1 435 51.7
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.7e-109 400.2 395 54.9
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.3e-104 384.0 419 52.3
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.3e-101 373.2 354 57.9
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.5e-100 369.8 434 47.0
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.6e-99 367.1 428 45.1
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.2e-98 362.1 411 49.9
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 7.6e-97 358.2 374 52.7
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 7.6e-97 358.2 373 55.2
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.7e-93 347.1 310 58.1
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.3e-93 346.7 401 49.4
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.8e-90 337.0 408 46.6
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-88 330.9 396 48.2
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.3e-88 330.9 365 50.4
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 2.4e-87 326.6 296 59.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.4e-87 326.6 316 53.2
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.7e-85 320.5 296 59.5
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.3e-85 320.1 296 59.5
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.2e-79 299.7 427 41.9
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 6.7e-69 265.4 444 37.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 7.6e-65 251.9 610 31.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 3.2e-63 246.5 192 64.1
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 9.3e-63 245.0 274 47.4
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.6e-62 244.2 441 35.1
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 4.2e-55 219.5 286 44.4
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 5.5e-55 219.2 265 46.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.2e-47 193.4 146 69.9
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.8e-43 180.3 282 43.6
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 9.1e-42 175.3 171 55.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 4.2e-39 166.4 327 36.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 7.0e-34 149.1 102 63.7
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 4.7e-30 136.3 87 67.8
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 2.4e-26 124.0 136 47.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.7e-25 119.0 150 43.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 7.2e-23 112.5 85 57.6
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.6e-22 110.2 246 32.9
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 4.7e-22 109.8 111 55.0
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.0e-21 108.6 246 32.9
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.3e-13 80.9 67 64.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 6.8e-13 79.3 70 62.9
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.5e-12 75.9 56 51.8
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-08 64.7 109 41.3
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 6.1e-06 56.2 42 52.4


User provided reference genes

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