Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012386 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 9.7e-49 196.4 95 100.0
CSS0012463 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 1.7e-37 159.1 95 84.2
CSS0035663 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 1.7e-37 159.1 95 84.2
CSS0031364 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 3.7e-16 88.2 95 54.7
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 1.5e-12 76.3 76 55.3
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 4.2e-12 74.7 76 53.9
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 7.2e-12 73.9 76 52.6
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 1.6e-11 72.8 48 72.9
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 2.1e-11 72.4 76 51.3
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 2.1e-11 72.4 48 70.8
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 2.1e-11 72.4 48 70.8
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 2.8e-11 72.0 48 68.8
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 2.8e-11 72.0 57 61.4
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 8.0e-11 70.5 48 70.8
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 1.0e-10 70.1 48 66.7
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 1.0e-10 70.1 48 68.8
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 1.8e-10 69.3 76 48.7
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 1.8e-10 69.3 67 53.7
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 2.3e-10 68.9 48 66.7
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 2.3e-10 68.9 37 83.8
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 2.3e-10 68.9 48 68.8
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 3.0e-10 68.6 48 66.7
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 3.0e-10 68.6 48 68.8
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 4.0e-10 68.2 48 68.8
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 4.0e-10 68.2 48 64.6
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 4.0e-10 68.2 56 64.3
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 5.2e-10 67.8 76 48.7
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 5.2e-10 67.8 79 45.6
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 5.2e-10 67.8 48 66.7
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 5.2e-10 67.8 75 49.3
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 6.8e-10 67.4 48 64.6
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 6.8e-10 67.4 48 66.7
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 6.8e-10 67.4 48 66.7
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 6.8e-10 67.4 48 66.7
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 8.8e-10 67.0 48 66.7
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 8.8e-10 67.0 48 64.6
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 8.8e-10 67.0 48 64.6
Carub.0003s2128 Capsella rubella HOM05D004014 ORTHO05D018183 1.2e-09 66.6 66 53.0
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 1.2e-09 66.6 48 64.6
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 1.2e-09 66.6 48 62.5
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 1.5e-09 66.2 76 47.4
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 1.5e-09 66.2 48 62.5
Duzib192G0196 Durio zibethinus HOM05D004014 ORTHO05D005890 1.5e-09 66.2 67 50.7
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 1.5e-09 66.2 62 56.5
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 2.0e-09 65.9 48 66.7
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 2.0e-09 65.9 48 64.6
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 2.6e-09 65.5 67 53.7
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 2.6e-09 65.5 47 68.1
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 3.4e-09 65.1 54 57.4
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 62.5
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 64.6
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 58.3
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 3.4e-09 65.1 48 62.5
unitig_37.g12991 Utricularia gibba HOM05D004014 ORTHO05D005890 3.4e-09 65.1 54 59.3
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 4.4e-09 64.7 48 62.5
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 4.4e-09 64.7 48 62.5
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 4.4e-09 64.7 37 78.4
Manes.04G137700 Manihot esculenta HOM05D004014 ORTHO05D005890 4.4e-09 64.7 48 62.5
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 4.4e-09 64.7 48 62.5
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 5.7e-09 64.3 48 62.5
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 5.7e-09 64.3 48 64.6
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 5.7e-09 64.3 67 49.3
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 7.5e-09 63.9 48 64.6
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 7.5e-09 63.9 48 62.5
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 7.5e-09 63.9 48 62.5
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 9.8e-09 63.5 47 63.8
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 9.8e-09 63.5 47 63.8
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 9.8e-09 63.5 48 64.6
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 9.8e-09 63.5 48 62.5
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 9.8e-09 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 1.3e-08 63.2 48 60.4
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 1.3e-08 63.2 48 60.4
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 1.3e-08 63.2 48 62.5
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 1.3e-08 63.2 48 60.4
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 1.3e-08 63.2 48 62.5
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.7e-08 62.8 48 58.3
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.7e-08 62.8 48 58.3
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 1.7e-08 62.8 48 60.4
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 2.2e-08 62.4 48 62.5
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 2.2e-08 62.4 48 60.4
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 2.2e-08 62.4 67 47.8
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 2.8e-08 62.0 48 62.5
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 2.8e-08 62.0 48 60.4
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 2.8e-08 62.0 47 59.6
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 2.8e-08 62.0 47 59.6
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 2.8e-08 62.0 48 62.5
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 2.8e-08 62.0 48 58.3
QL05p015273 Quercus lobata HOM05D004014 ORTHO05D005890 2.8e-08 62.0 36 77.8
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 2.8e-08 62.0 48 62.5
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 3.7e-08 61.6 48 60.4
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 3.7e-08 61.6 48 62.5
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 3.7e-08 61.6 48 60.4
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 3.7e-08 61.6 48 60.4
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 4.9e-08 61.2 67 47.8
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 6.3e-08 60.8 48 60.4
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 6.3e-08 60.8 56 51.8
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 6.3e-08 60.8 48 58.3
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 6.3e-08 60.8 46 63.0
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 6.3e-08 60.8 48 58.3
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 8.3e-08 60.5 48 56.2
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 8.3e-08 60.5 48 56.2
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 8.3e-08 60.5 48 60.4
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 1.1e-07 60.1 48 56.2
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 1.1e-07 60.1 48 58.3
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.1e-07 60.1 48 56.2
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 1.4e-07 59.7 37 75.7
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 1.8e-07 59.3 48 58.3
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 1.8e-07 59.3 48 58.3
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 2.4e-07 58.9 48 58.3
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 2.4e-07 58.9 47 57.4
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 4.1e-07 58.2 48 60.4
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 7.0e-07 57.4 37 67.6
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 2.0e-06 55.8 37 67.6


User provided reference genes

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