Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012367 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.0e-100 369.0 175 100.0
CSS0029949 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 8.8e-56 220.7 121 88.4
ATR0763G188 Amborella trichopoda HOM05D004878 ORTHO05D006497 3.1e-53 212.2 121 83.5
COL.COLO4_30984 Corchorus olitorius HOM05D004878 ORTHO05D006497 4.1e-53 211.8 121 83.5
Nn7g38129 Nelumbo nucifera HOM05D004878 ORTHO05D006497 1.2e-52 210.3 121 81.8
vmacro03511 Vaccinium macrocarpon HOM05D004878 ORTHO05D006497 1.2e-52 210.3 126 80.2
Thecc.06G141500 Theobroma cacao HOM05D004878 ORTHO05D006497 1.6e-52 209.9 121 82.6
DCAR_003786 Daucus carota HOM05D004878 ORTHO05D006497 2.0e-52 209.5 121 82.6
Lj1A1144T48 Lonicera japonica HOM05D004878 ORTHO05D006497 2.0e-52 209.5 121 81.8
FAN16G2586 Fragaria x ananassa HOM05D004878 ORTHO05D006497 2.7e-52 209.1 121 82.6
FvH4_3g12170 Fragaria vesca HOM05D004878 ORTHO05D006497 3.5e-52 208.8 121 82.6
RcHm_v2.0_Chr5g0019961 Rosa chinensis HOM05D004878 ORTHO05D006497 3.5e-52 208.8 121 82.6
TAR624G0003 Trochodendron aralioides HOM05D004878 ORTHO05D006497 3.5e-52 208.8 121 81.0
PSO675G2265 Papaver somniferum HOM05D004878 ORTHO05D006497 4.5e-52 208.4 121 81.0
Peaxi162Scf00149g00811 Petunia axillaris HOM05D004878 ORTHO05D006497 4.5e-52 208.4 125 80.8
Rhsim13G0131200 Rhododendron simsii HOM05D004878 ORTHO05D006497 4.5e-52 208.4 121 82.6
Aqoxy3G04145 Aquilegia oxysepala HOM05D004878 ORTHO05D006497 5.9e-52 208.0 121 81.0
Cpa.g.sc135.22 Carica papaya HOM05D004878 ORTHO05D006497 5.9e-52 208.0 121 81.0
Phvul.009G205700 Phaseolus vulgaris HOM05D004878 ORTHO05D006497 5.9e-52 208.0 121 81.8
Actinidia33655 Actinidia chinensis HOM05D004878 ORTHO05D006497 7.7e-52 207.6 121 82.6
Ciclev10015670m.g Citrus clementina HOM05D004878 ORTHO05D006497 7.7e-52 207.6 121 81.8
PSO675G3235 Papaver somniferum HOM05D004878 ORTHO05D006497 7.7e-52 207.6 121 81.0
TPR.G9524 Trifolium pratense HOM05D004878 ORTHO05D006497 7.7e-52 207.6 121 81.8
VMungo1309G2006 Vigna mungo HOM05D004878 ORTHO05D006497 7.7e-52 207.6 121 81.8
FAN21G2052 Fragaria x ananassa HOM05D004878 ORTHO05D006497 1.0e-51 207.2 121 81.8
Gohir.D05G147300 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.0e-51 207.2 121 81.0
Gorai.009G151300 Gossypium raimondii HOM05D004878 ORTHO05D006497 1.0e-51 207.2 121 81.0
CDE05G2830 Ceratophyllum demersum HOM05D004878 ORTHO05D006497 1.3e-51 206.8 121 80.2
Gohir.A05G144900 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.3e-51 206.8 121 81.0
CANSAT35G1110 Cannabis sativa HOM05D004878 ORTHO05D006497 1.7e-51 206.5 121 80.2
MD10G1234100 Malus domestica HOM05D004878 ORTHO05D006497 1.7e-51 206.5 121 81.8
GSVIVG01012083001 Vitis vinifera HOM05D004878 ORTHO05D006497 1.7e-51 206.5 121 81.8
Potri.012G120492 Populus trichocarpa HOM05D004878 ORTHO05D006497 2.2e-51 206.1 121 81.8
BcaB07g32781 Brassica carinata HOM05D004878 ORTHO05D006497 2.9e-51 205.7 121 80.2
A09p35050 Brassica napus HOM05D004878 ORTHO05D006497 2.9e-51 205.7 121 80.2
BraA09t39036Z Brassica rapa HOM05D004878 ORTHO05D006497 2.9e-51 205.7 121 80.2
CARHR030660 Cardamine hirsuta HOM05D004878 ORTHO05D006497 2.9e-51 205.7 121 80.2
Thhalv10007962m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 2.9e-51 205.7 121 80.2
arahy.Tifrunner.gnm1.ann1.6I23D0 Arachis hypogaea HOM05D004878 ORTHO05D006497 3.8e-51 205.3 121 79.3
Carub.0001s2959 Capsella rubella HOM05D004878 ORTHO05D006497 3.8e-51 205.3 121 80.2
AT1G31190 Arabidopsis thaliana HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
BcaC05g27149 Brassica carinata HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
C05p30360 Brassica napus HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
BolC5t31775H Brassica oleracea HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
Lalb_Chr11g0072281 Lupinus albus HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
Medtr0151s0030 Medicago truncatula HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 80.2
Sed0019791 Sechium edule HOM05D004878 ORTHO05D006497 5.0e-51 204.9 121 81.0
MBI01_g44876_MAGBIO Magnolia biondii HOM05D004878 ORTHO05D006497 6.5e-51 204.5 121 79.3
Sc10g0005320 Simmondsia chinensis HOM05D004878 ORTHO05D006497 6.5e-51 204.5 121 80.2
TWI63G1027 Tripterygium wilfordii HOM05D004878 ORTHO05D006497 6.5e-51 204.5 121 80.2
AL1G49290 Arabidopsis lyrata HOM05D004878 ORTHO05D006497 8.5e-51 204.1 121 79.3
Ca_04469_v3 Cicer arietinum L. HOM05D004878 ORTHO05D006497 8.5e-51 204.1 121 80.2
Duzib235G0192 Durio zibethinus HOM05D004878 ORTHO05D006497 8.5e-51 204.1 121 78.5
MD05G1253100 Malus domestica HOM05D004878 ORTHO05D006497 8.5e-51 204.1 121 81.0
CAN.G519.8 Capsicum annuum HOM05D004878 ORTHO05D006497 1.1e-50 203.8 121 81.8
Solyc02g069010.4 Solanum lycopersicum HOM05D004878 ORTHO05D006497 1.1e-50 203.8 121 81.8
Sopen02g018080 Solanum pennellii HOM05D004878 ORTHO05D006497 1.1e-50 203.8 121 81.8
Atru.chr10.492 Acer truncatum HOM05D004878 ORTHO05D006497 1.5e-50 203.4 121 80.2
Migut.M01973 Erythranthe guttata HOM05D004878 ORTHO05D006497 1.5e-50 203.4 121 81.0
Eucgr.E01881 Eucalyptus grandis HOM05D004878 ORTHO05D006497 1.5e-50 203.4 121 79.3
Lj6g0027572 Lotus japonicus HOM05D004878 ORTHO05D006497 1.5e-50 203.4 121 79.3
Potri.015G120400 Populus trichocarpa HOM05D004878 ORTHO05D006497 1.5e-50 203.4 121 81.8
SGA_v2.0_scaffold175G39366 Striga asiatica HOM05D004878 ORTHO05D006497 1.5e-50 203.4 120 80.0
FAN25G2275 Fragaria x ananassa HOM05D004878 ORTHO05D006497 1.9e-50 203.0 120 80.0
Lsat_1_v5_gn_5_36260 Lactuca sativa HOM05D004878 ORTHO05D006497 1.9e-50 203.0 125 76.0
Sp1g27010 Schrenkiella parvula HOM05D004878 ORTHO05D006497 1.9e-50 203.0 121 79.3
unitig_27.g24819 Utricularia gibba HOM05D004878 ORTHO05D006497 1.9e-50 203.0 121 78.5
arahy.Tifrunner.gnm1.ann1.RY21T0 Arachis hypogaea HOM05D004878 ORTHO05D006497 2.5e-50 202.6 121 77.7
MSTRG.16341 Avicennia marina HOM05D004878 ORTHO05D006497 2.5e-50 202.6 121 79.3
Cc09_g06230 Coffea canephora HOM05D004878 ORTHO05D006497 2.5e-50 202.6 121 80.2
Sabra12G0088600 Salix brachista HOM05D004878 ORTHO05D006497 2.5e-50 202.6 121 80.2
Sabra12G0091900 Salix brachista HOM05D004878 ORTHO05D006497 2.5e-50 202.6 121 80.2
Psat1g023920 Pisum sativum HOM05D004878 ORTHO05D006497 3.2e-50 202.2 121 78.5
CSS0036272 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 4.2e-50 201.8 175 66.3
Glyma.06G218300 Glycine max HOM05D004878 ORTHO05D006497 4.2e-50 201.8 121 79.3
Aa31LG2G15140 Aethionema arabicum HOM05D004878 ORTHO05D006497 5.5e-50 201.4 121 77.7
Cfa000720 Carpinus fangiana HOM05D004878 ORTHO05D006497 7.2e-50 201.1 121 78.5
HanXRQChr12g0378221 Helianthus annuus HOM05D004878 ORTHO05D006497 9.4e-50 200.7 121 78.5
Nitab4.5_0002056g0080 Nicotiana tabacum HOM05D004878 ORTHO05D006497 9.4e-50 200.7 121 80.2
SalBow8G2261 Salvia bowleyana HOM05D004878 ORTHO05D006497 1.6e-49 199.9 121 79.3
Ah.02g114390 Amaranthus hybridus HOM05D004878 ORTHO05D006497 2.1e-49 199.5 121 77.7
EL10Ac5g11219 Beta vulgaris HOM05D004878 ORTHO05D006497 2.1e-49 199.5 121 77.7
AUR62032164 Chenopodium quinoa HOM05D004878 ORTHO05D006497 2.1e-49 199.5 121 78.5
AUR62036922 Chenopodium quinoa HOM05D004878 ORTHO05D006497 2.1e-49 199.5 121 78.5
ClCG01G010320 Citrullus lanatus HOM05D004878 ORTHO05D006497 2.1e-49 199.5 124 76.6
THA.LOC104798550 Tarenaya hassleriana HOM05D004878 ORTHO05D006497 2.1e-49 199.5 121 76.9
ECA246G0899 Erigeron canadensis HOM05D004878 ORTHO05D006497 2.7e-49 199.1 121 77.7
Manes.16G059325 Manihot esculenta HOM05D004878 ORTHO05D006497 3.6e-49 198.7 121 78.5
MELO3C025560.2 Cucumis melo HOM05D004878 ORTHO05D006497 4.7e-49 198.4 121 78.5
CsaV3_1G017150 Cucumis sativus L. HOM05D004878 ORTHO05D006497 4.7e-49 198.4 121 78.5
QL11p017966 Quercus lobata HOM05D004878 ORTHO05D006497 4.7e-49 198.4 121 77.7
HPP92_028557 Vanilla planifolia HOM05D004878 ORTHO05D006497 1.8e-48 196.4 121 76.9
Zm00001eb207300 Zea mays HOM05D004878 ORTHO05D006497 4.0e-48 195.3 121 75.2
Gohir.D05G147200 Gossypium hirsutum HOM05D004878 ORTHO05D006497 8.8e-48 194.1 121 75.2
Os02g0169900 Oryza sativa ssp. japonica HOM05D004878 ORTHO05D006497 8.8e-48 194.1 121 76.0
SEGI_01553 Sequoiadendron giganteum HOM05D004878 ORTHO05D006497 3.4e-47 192.2 121 72.7
Gorai.009G151200 Gossypium raimondii HOM05D004878 ORTHO05D006497 4.4e-47 191.8 121 74.4
Mapoly0024s0023 Marchantia polymorpha HOM05D004878 ORTHO05D006497 7.5e-47 191.0 121 73.6
PGR042G0940 Punica granatum HOM05D004878 ORTHO05D006497 1.3e-46 190.3 121 75.2
Gohir.A05G144800 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.7e-46 189.9 121 73.6
SMO351G0334 Selaginella moellendorffii HOM05D004878 ORTHO05D006497 1.7e-46 189.9 121 72.7
CBR_g30341 Chara braunii HOM05D004878 ORTHO05D006497 3.7e-46 188.7 121 73.6
Hund02535 Selenicereus undatus HOM05D004878 ORTHO05D006497 4.1e-45 185.3 146 63.7
Pp3c21_18140 Physcomitrium patens HOM05D004878 ORTHO05D006497 2.5e-42 176.0 121 67.8
AagrBONN_evm.TU.Sc2ySwM_228.275 Anthoceros agrestis HOM05D004878 ORTHO05D006497 2.1e-41 172.9 152 59.2
PRCOL_00002057 Prasinoderma coloniale HOM05D004878 ORTHO05D006497 5.7e-39 164.9 124 62.9
Cre02.g109600 Chlamydomonas reinhardtii HOM05D004878 ORTHO05D006497 9.8e-39 164.1 124 59.7
Thhalv10009483m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 8.3e-38 161.0 102 76.5
Hma1.2p1_0185F.1_g081360 Hydrangea macrophylla HOM05D004878 ORTHO05D006497 3.9e-35 152.1 72 97.2
CSS0045199 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 6.6e-35 151.4 133 60.9
CiPaw.09G078300 Carya illinoinensis HOM05D004878 ORTHO05D006497 2.8e-33 146.0 76 88.2
RcHm_v2.0_Chr5g0019951 Rosa chinensis HOM05D004878 ORTHO05D006497 1.8e-32 143.3 116 62.1
HPP92_027574 Vanilla planifolia HOM05D004878 ORTHO05D006497 1.5e-31 140.2 74 85.1
MD05G1355100 Malus domestica HOM05D004878 ORTHO05D006497 1.1e-29 134.0 115 60.9
Prupe.4G110600 Prunus persica HOM05D004878 ORTHO05D006497 4.1e-29 132.1 94 68.1
Cre02.g085900 Chlamydomonas reinhardtii HOM05D004878 ORTHO05D006497 2.6e-23 112.8 121 45.5
PSO339G3808 Papaver somniferum HOM05D004878 ORTHO05D006497 3.3e-18 95.9 77 59.7
PSO144G0043 Papaver somniferum HOM05D004878 ORTHO05D006497 7.3e-18 94.7 77 59.7
PSO724G1267 Papaver somniferum HOM05D004878 ORTHO05D006497 7.3e-18 94.7 74 60.8
PSO724G1357 Papaver somniferum HOM05D004878 ORTHO05D006497 7.3e-18 94.7 77 59.7
PSO339G1016 Papaver somniferum HOM05D004878 ORTHO05D006497 9.5e-18 94.4 77 58.4
Nitab4.5_0003773g0010 Nicotiana tabacum HOM05D004878 ORTHO05D006497 4.4e-15 85.5 41 92.7
SalBow8G2923 Salvia bowleyana HOM05D004878 ORTHO05D006497 2.9e-14 82.8 40 95.0
MD05G1254000 Malus domestica HOM05D001295 ORTHO05D002125 9.2e-13 77.8 39 94.9
SalBow8G4975 Salvia bowleyana HOM05D004878 ORTHO05D006497 2.1e-12 76.6 58 67.2
MD05G1253300 Malus domestica HOM05D004878 ORTHO05D006497 1.9e-10 70.1 31 96.8
PSO017G2381 Papaver somniferum HOM05D004878 ORTHO05D302730 9.6e-10 67.8 48 64.6
Haze_26303 Corylus avellana HOM05D000919 ORTHO05D004442 8.1e-09 64.7 110 35.5
MCO16G076 Micromonas commoda HOM05D004878 ORTHO05D006497 2.4e-08 63.2 108 37.0
MD05G1253800 Malus domestica HOM05D004878 ORTHO05D006497 1.5e-07 60.5 41 68.3
PSO832G0434 Papaver somniferum HOM05D004878 ORTHO05D006497 4.4e-07 58.9 55 54.5
AL3G12290 Arabidopsis lyrata HOM05D000919 ORTHO05D004442 9.9e-07 57.8 110 36.4
CARHR076880 Cardamine hirsuta HOM05D000919 ORTHO05D004442 1.3e-06 57.4 110 35.5
unitig_0.g945 Utricularia gibba HOM05D000919 ORTHO05D004442 1.3e-06 57.4 114 36.0
AT3G02870 Arabidopsis thaliana HOM05D000919 ORTHO05D004442 2.9e-06 56.2 110 35.5
Carub.0003s0197 Capsella rubella HOM05D000919 ORTHO05D004442 2.9e-06 56.2 110 35.5
BcaB04g19381 Brassica carinata HOM05D000919 ORTHO05D004442 6.4e-06 55.1 111 36.0
Pp3c21_8340 Physcomitrium patens HOM05D004878 ORTHO05D004442 6.4e-06 55.1 113 32.7
PRCOL_00004145 Prasinoderma coloniale HOM05D000919 ORTHO05D004442 6.4e-06 55.1 110 36.4


User provided reference genes

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