Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.1e-159 565.1 284 100.0
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.9e-125 452.2 289 83.7
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.2e-117 426.0 285 78.9
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.5e-117 424.5 272 82.0
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.1e-111 407.1 274 79.2
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-111 406.8 302 72.8
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.7e-110 402.5 278 78.8
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-109 398.7 266 78.9
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.8e-109 398.7 275 76.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.5e-109 397.9 273 78.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-108 396.7 266 78.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.9e-108 396.4 265 78.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.5e-108 396.0 261 77.8
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.2e-108 395.6 272 77.6
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 5.5e-108 394.8 257 79.8
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.1e-107 392.9 265 78.1
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 3.6e-107 392.1 234 85.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.0e-106 390.6 285 75.4
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.0e-106 390.6 275 76.0
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.8e-106 389.8 281 74.4
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.3e-106 389.4 287 74.2
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.2e-106 388.3 277 74.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.2e-106 388.3 269 77.0
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 8.8e-106 387.5 234 85.0
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.2e-105 387.1 280 72.5
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.5e-105 386.7 265 77.0
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-105 386.7 314 67.5
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.0e-105 386.3 225 85.8
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.4e-105 385.6 270 75.2
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 3.4e-105 385.6 266 75.2
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.4e-105 385.2 264 76.9
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 5.7e-105 384.8 271 75.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.7e-105 384.8 262 75.2
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 9.8e-105 384.0 274 75.5
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 9.8e-105 384.0 272 75.4
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.8e-104 382.5 280 71.8
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.8e-104 382.5 268 76.9
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.7e-104 382.1 273 74.7
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 4.9e-104 381.7 274 74.1
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 6.3e-104 381.3 280 71.8
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.1e-103 380.6 284 71.8
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.1e-103 380.6 278 73.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.1e-103 380.6 272 75.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.4e-103 380.2 285 71.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.4e-103 379.4 267 75.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.4e-103 378.3 259 78.0
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 7.0e-103 377.9 280 71.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 9.1e-103 377.5 216 85.6
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.2e-102 377.1 284 70.8
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.2e-102 377.1 271 74.5
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.6e-102 376.7 249 79.9
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 2.7e-102 375.9 278 73.7
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.5e-102 375.2 266 76.3
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 7.7e-102 374.4 255 76.1
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 7.7e-102 374.4 283 71.0
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 7.7e-102 374.4 270 71.9
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.3e-101 373.6 213 86.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.7e-101 373.2 271 73.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.3e-101 372.9 267 75.3
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.9e-101 372.5 278 72.3
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 6.6e-101 371.3 273 72.5
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 6.6e-101 371.3 213 86.4
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.6e-101 370.9 227 82.8
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 8.6e-101 370.9 213 86.9
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.9e-100 369.8 275 73.1
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.5e-100 369.4 267 74.5
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 3.3e-100 369.0 286 70.6
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 4.3e-100 368.6 262 76.7
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 5.6e-100 368.2 287 70.7
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 9.5e-100 367.5 212 85.8
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 9.5e-100 367.5 265 74.3
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 2.1e-99 366.3 214 86.9
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.1e-99 366.3 228 82.9
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.8e-99 365.9 276 72.8
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.8e-99 365.9 213 86.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.8e-99 365.9 253 75.1
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.8e-99 365.9 210 86.2
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 8.0e-99 364.4 242 76.9
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.0e-98 364.0 211 84.8
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.0e-98 364.0 227 82.4
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.0e-98 364.0 213 85.4
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 2.3e-98 362.8 212 84.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.3e-98 362.8 272 75.0
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-98 362.5 278 70.9
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 3.0e-98 362.5 267 73.4
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.2e-98 361.7 281 70.8
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.8e-98 361.3 219 82.6
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 6.8e-98 361.3 210 84.8
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.0e-97 359.8 211 84.8
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.0e-97 359.8 214 85.0
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.0e-97 359.8 214 84.6
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.0e-97 359.8 198 88.4
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.6e-97 359.4 212 83.5
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 2.6e-97 359.4 212 83.5
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.6e-97 359.4 277 70.4
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.4e-97 359.0 271 73.1
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.4e-97 359.0 274 71.2
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.9e-96 355.1 275 69.8
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 4.9e-96 355.1 219 81.7
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 6.4e-96 354.8 246 74.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 8.3e-96 354.4 202 86.6
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.4e-95 353.6 263 71.1
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.8e-95 353.2 202 86.1
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.4e-95 352.8 263 71.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.4e-95 352.8 261 71.3
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 7.0e-95 351.3 258 71.3
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.2e-94 350.5 285 67.4
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 2.0e-94 349.7 202 85.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 7.8e-94 347.8 202 84.7
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 8.6e-93 344.4 202 83.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-92 342.8 239 75.3
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.3e-92 342.0 321 62.0
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 4.3e-92 342.0 211 81.5
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.1e-91 339.7 203 83.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 2.1e-91 339.7 198 82.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 8.0e-91 337.8 224 77.2
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 5.2e-90 335.1 250 70.0
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.4e-88 328.2 288 66.0
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-87 326.2 300 62.3
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 9.2e-87 324.3 238 75.2
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.5e-86 322.4 262 68.3
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.0e-85 320.9 316 61.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.7e-85 320.1 196 79.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.6e-85 318.2 259 66.4
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 9.5e-84 314.3 166 92.2
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.8e-83 312.8 263 67.7
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.9e-82 307.8 284 62.3
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.2e-81 307.4 232 75.9
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.0e-81 306.6 193 79.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 4.9e-80 302.0 224 69.6
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 2.1e-78 296.6 166 88.0
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 7.3e-76 288.1 210 68.6
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 7.3e-76 288.1 236 68.6
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 3.6e-75 285.8 155 89.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 3.6e-75 285.8 231 69.3
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.6e-73 279.6 168 80.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 3.7e-72 275.8 192 74.5
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 7.1e-71 271.6 249 62.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 3.9e-69 265.8 269 56.9
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 8.6e-69 264.6 148 84.5
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.7e-67 258.8 212 67.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.8e-66 255.0 159 80.5
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.3e-64 250.8 233 61.4
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 3.5e-62 242.7 210 64.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.8e-62 241.5 149 80.5
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.1e-58 231.1 167 73.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 3.4e-57 226.1 174 71.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.4e-55 220.7 202 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.4e-55 219.9 186 60.2
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.1e-50 204.5 172 64.0
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 7.1e-47 191.8 127 77.2
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 5.1e-45 185.7 336 40.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.9e-39 167.2 242 46.7
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 6.7e-37 158.7 188 43.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.6e-35 154.1 200 42.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.6e-33 146.7 225 40.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.8e-32 142.9 84 84.5
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 5.3e-26 122.5 122 57.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-25 120.9 155 52.3
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 7.2e-23 112.1 85 65.9
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.6e-22 109.8 62 85.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-21 107.5 62 83.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.8e-18 97.4 59 84.7
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.2e-11 73.9 56 73.2
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.2e-11 72.0 36 91.7
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 2.4e-10 70.5 118 39.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.1e-10 70.1 40 85.0
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.0e-09 67.4 40 77.5
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 2.9e-08 63.5 32 93.8
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.0e-08 62.8 42 71.4
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.2e-07 60.1 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 3.6e-06 56.6 53 56.6


User provided reference genes

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