Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 6.7e-142 507.3 249 100.0
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 3.8e-113 411.8 207 97.1
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 6.5e-113 411.0 207 96.1
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 1.1e-112 410.2 220 93.2
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 2.5e-112 409.1 207 95.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 7.2e-112 407.5 207 94.7
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 9.5e-112 407.1 207 94.7
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 9.5e-112 407.1 207 94.7
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.2e-111 406.8 207 94.7
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.2e-111 406.8 207 95.7
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.6e-111 406.4 207 96.1
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 4.7e-111 404.8 207 94.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 6.1e-111 404.4 206 94.7
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 8.0e-111 404.1 209 93.3
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 8.0e-111 404.1 207 94.2
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.0e-110 403.7 206 95.1
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 1.0e-110 403.7 207 95.2
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.4e-110 403.3 206 94.2
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.3e-110 402.5 207 93.7
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 2.3e-110 402.5 207 92.8
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 3.0e-110 402.1 207 93.2
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 3.0e-110 402.1 207 93.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 5.2e-110 401.4 206 92.7
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 5.2e-110 401.4 207 94.7
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 5.2e-110 401.4 207 94.2
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 5.2e-110 401.4 207 93.7
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 6.8e-110 401.0 206 93.7
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 8.8e-110 400.6 207 93.2
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.2e-109 400.2 207 93.2
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.2e-109 400.2 207 93.2
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 1.2e-109 400.2 207 93.2
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 1.2e-109 400.2 207 94.7
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 2.0e-109 399.4 207 92.8
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 3.4e-109 398.7 207 93.2
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.4e-109 398.7 207 93.2
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 3.4e-109 398.7 207 92.8
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 4.4e-109 398.3 206 93.7
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.4e-109 398.3 207 92.8
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 4.4e-109 398.3 207 92.3
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 4.4e-109 398.3 206 92.2
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 4.4e-109 398.3 207 92.8
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 4.4e-109 398.3 207 92.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 5.7e-109 397.9 207 92.3
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 7.5e-109 397.5 207 92.3
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 7.5e-109 397.5 207 92.3
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 91.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 91.3
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 91.3
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 92.8
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 92.3
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 9.8e-109 397.1 207 92.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.3e-108 396.7 207 92.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.3e-108 396.7 207 92.8
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.3e-108 396.7 207 92.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 1.7e-108 396.4 207 91.8
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 3.7e-108 395.2 206 92.7
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 3.7e-108 395.2 205 92.2
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 6.3e-108 394.4 207 91.8
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 8.3e-108 394.0 207 92.3
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.1e-107 393.7 206 91.7
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.4e-107 393.3 206 90.3
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.1e-107 392.1 207 91.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 5.4e-107 391.3 207 90.3
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.6e-106 389.8 206 91.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 4.5e-106 388.3 206 90.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.5e-106 388.3 206 91.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 4.5e-106 388.3 207 91.8
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 7.8e-106 387.5 206 90.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 1.0e-105 387.1 207 88.4
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.3e-105 386.7 207 91.3
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.3e-105 386.7 207 89.4
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 1.7e-105 386.3 207 88.9
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 5.6e-104 381.3 211 89.6
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.1e-103 379.4 206 88.3
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.1e-103 379.4 206 88.3
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 6.1e-103 377.9 206 87.4
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 8.0e-103 377.5 206 87.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 8.0e-103 377.5 206 87.9
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 8.0e-103 377.5 206 87.9
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.0e-102 377.1 206 87.4
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.0e-102 377.1 206 87.4
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.0e-102 377.1 206 88.8
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.8e-102 376.3 236 80.9
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 3.0e-102 375.6 206 87.4
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 3.0e-102 375.6 206 87.4
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 3.0e-102 375.6 206 87.4
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 3.4e-101 372.1 206 85.9
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.4e-101 372.1 206 85.9
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 3.4e-101 372.1 206 85.4
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 3.4e-101 372.1 207 85.0
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.3e-100 370.2 284 68.7
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 7.8e-98 360.9 290 65.9
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.7e-97 359.8 207 83.6
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 5.6e-96 354.8 206 84.5
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 2.3e-94 349.4 198 85.9
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.9e-92 342.4 206 83.0
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 4.6e-90 335.1 207 79.2
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.1e-88 330.5 206 75.2
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.5e-88 330.1 200 78.5
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.1e-87 326.2 205 75.6
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-85 320.1 205 74.1
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 7.5e-85 317.8 163 92.6
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-84 317.0 205 74.1
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.2e-83 312.4 205 72.7
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 7.1e-83 311.2 165 90.3
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.5e-82 308.9 216 74.5
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 6.0e-82 308.1 165 89.7
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 6.6e-81 304.7 206 74.3
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.3e-80 302.4 207 70.5
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.8e-77 291.6 207 69.1
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 2.7e-74 282.7 233 63.1
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 3.6e-71 272.3 142 94.4
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-70 270.8 142 93.7
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 9.0e-70 267.7 145 91.0
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.9e-59 233.4 207 60.9
Gohir.A12G174201 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.4e-59 231.9 117 95.7
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.1e-55 219.9 117 91.5
Cpa.g.sc34.43 Carica papaya HOM05D003504 ORTHO05D004006 3.9e-49 199.1 102 92.2
Peaxi162Scf00280g00008 Petunia axillaris HOM05D003504 ORTHO05D004006 4.8e-47 192.2 135 74.8
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.8e-41 173.7 115 76.5
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 4.3e-40 169.1 111 71.2
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 7.4e-32 141.7 68 95.6
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.2e-27 126.3 71 80.3
Phvul.011G172400 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.7e-18 95.9 49 89.8
vmacro15990 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 6.1e-18 95.5 49 100.0
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 8.0e-18 95.1 47 89.4
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.3e-15 87.8 43 93.0
Haze_18583 Corylus avellana HOM05D002115 ORTHO05D002263 2.2e-15 87.0 48 83.3
QL04p084884 Quercus lobata HOM05D003504 ORTHO05D004006 2.4e-14 83.6 40 92.5


User provided reference genes

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