Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.5e-47 191.8 98 100.0
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.6e-38 161.0 86 94.2
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 6.8e-13 77.4 44 90.9
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 3.4e-12 75.1 45 84.4
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 3.4e-12 75.1 44 84.1
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 5.7e-12 74.3 45 84.4
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 5.7e-12 74.3 44 88.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 5.7e-12 74.3 44 88.6
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.5e-12 73.9 45 82.2
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 7.5e-12 73.9 45 80.0
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-11 73.2 45 82.2
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.3e-11 73.2 45 82.2
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.7e-11 72.8 44 84.1
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.7e-11 72.8 45 80.0
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 2.8e-11 72.0 44 86.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.7e-11 71.6 45 80.0
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.8e-11 71.2 45 75.6
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 6.3e-11 70.9 45 77.8
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 6.3e-11 70.9 44 81.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 8.3e-11 70.5 45 80.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 8.3e-11 70.5 45 77.8
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.1e-10 70.1 44 81.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.1e-10 70.1 43 81.4
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.1e-10 70.1 45 77.8
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.1e-10 70.1 45 77.8
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.4e-10 69.7 45 75.6
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.8e-10 69.3 45 77.8
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.8e-10 69.3 43 83.7
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.8e-10 69.3 45 77.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 2.4e-10 68.9 45 80.0
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 3.1e-10 68.6 45 77.8
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.1e-10 68.6 45 73.3
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 3.1e-10 68.6 45 73.3
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.1e-10 68.6 45 75.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 5.4e-10 67.8 45 77.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 5.4e-10 67.8 58 62.1
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 7.0e-10 67.4 41 82.9
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.1e-10 67.0 67 56.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.1e-10 67.0 67 56.7
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.2e-09 66.6 44 77.3
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.2e-09 66.6 44 77.3
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.2e-09 66.6 44 77.3
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.6e-09 66.2 45 77.8
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.6e-09 66.2 41 82.9
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.0e-09 65.9 41 80.5
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.0e-09 65.9 41 80.5
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.0e-09 65.9 41 80.5
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.0e-09 65.9 41 80.5
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.0e-09 65.9 43 76.7
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.7e-09 65.5 43 74.4
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 2.7e-09 65.5 44 75.0
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.7e-09 65.5 43 79.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.7e-09 65.5 45 73.3
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.5e-09 65.1 45 77.8
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.5e-09 65.1 44 72.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.5e-09 65.1 41 80.5
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.5e-09 64.7 44 79.5
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 5.9e-09 64.3 45 73.3
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 7.7e-09 63.9 45 75.6
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 7.7e-09 63.9 43 74.4
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.3e-08 63.2 46 76.1
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.7e-08 62.8 44 70.5
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.2e-08 62.4 42 76.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 2.2e-08 62.4 45 75.6
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 5.0e-08 61.2 43 72.1
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 6.5e-08 60.8 45 68.9
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 6.5e-08 60.8 45 68.9
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 6.5e-08 60.8 42 73.8
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 8.5e-08 60.5 45 66.7
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 8.5e-08 60.5 43 67.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.1e-07 60.1 45 68.9
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.1e-07 60.1 42 71.4
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.1e-07 60.1 43 69.8
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.1e-07 60.1 40 75.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.5e-07 58.9 42 71.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.5e-07 58.9 42 71.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.5e-07 58.9 42 71.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.5e-07 58.9 44 75.0
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 2.5e-07 58.9 43 69.8
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.2e-07 58.5 41 75.6
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.2e-07 58.5 43 67.4
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 4.2e-07 58.2 42 71.4
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.5e-07 57.8 39 76.9
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 5.5e-07 57.8 42 69.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 7.2e-07 57.4 40 72.5
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.2e-07 57.4 40 72.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 9.4e-07 57.0 41 73.2
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 9.4e-07 57.0 45 64.4
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.2e-06 56.6 43 65.1
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.6e-06 56.2 42 66.7
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.1e-06 55.8 45 66.7
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.1e-06 55.8 41 75.6
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.7e-06 54.7 41 65.9
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 4.7e-06 54.7 43 67.4
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 6.1e-06 54.3 45 62.2
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.1e-06 54.3 45 62.2
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.1e-06 54.3 45 62.2
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 6.1e-06 54.3 30 86.7
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 8.0e-06 53.9 32 84.4
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 8.0e-06 53.9 45 62.2
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 8.0e-06 53.9 43 62.8


User provided reference genes

Program Settings