Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 5.0e-128 461.1 224 100.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.5e-95 353.2 214 85.0
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.8e-82 309.7 229 71.6
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.6e-79 298.1 220 70.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.3e-79 297.7 220 70.5
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 8.0e-78 294.3 221 69.2
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 4.0e-77 292.0 219 69.9
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 4.0e-77 292.0 220 70.0
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.8e-76 288.1 220 67.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.7e-75 286.6 224 65.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 4.6e-73 278.5 219 66.2
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 4.6e-73 278.5 222 65.8
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 4.6e-73 278.5 222 65.3
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.8e-73 277.7 220 67.3
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 7.8e-73 277.7 222 64.9
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.3e-72 276.9 222 65.3
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.1e-71 273.9 222 64.9
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.5e-71 272.7 222 64.9
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 7.3e-71 271.2 218 65.6
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 9.5e-71 270.8 219 63.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 9.5e-71 270.8 219 63.9
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.6e-70 270.0 219 63.9
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 4.7e-70 268.5 220 64.5
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 8.1e-70 267.7 219 63.5
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 8.1e-70 267.7 221 64.7
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.8e-69 266.5 213 63.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.1e-69 265.8 220 65.0
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 3.1e-69 265.8 211 63.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 4.0e-69 265.4 215 63.7
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 8.9e-69 264.2 221 63.8
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.6e-68 262.7 220 63.6
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 3.4e-68 262.3 220 63.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 4.4e-68 261.9 221 62.9
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 7.5e-68 261.2 222 61.7
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.9e-67 259.2 214 62.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.9e-67 259.2 225 61.3
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.9e-67 258.5 222 62.6
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-66 257.3 219 63.5
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.4e-66 256.1 220 62.7
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.2e-66 255.8 220 61.8
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.2e-66 255.8 220 61.8
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 7.1e-66 254.6 224 62.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.2e-65 253.8 230 58.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.7e-65 252.7 217 61.3
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.6e-65 251.9 222 59.5
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 4.6e-65 251.9 220 60.5
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 7.8e-65 251.1 217 60.4
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 7.8e-65 251.1 217 60.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.0e-64 250.8 222 59.5
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.0e-64 250.8 209 61.2
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.7e-64 250.0 252 54.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.7e-64 250.0 212 61.8
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.7e-64 250.0 215 60.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.3e-64 249.6 220 60.9
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.0e-64 249.2 203 63.5
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 3.0e-64 249.2 223 58.7
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.9e-64 248.8 220 60.0
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.1e-64 248.4 220 59.5
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 5.1e-64 248.4 224 60.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.6e-64 248.1 204 64.2
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 8.6e-64 247.7 192 64.6
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.6e-64 247.7 217 59.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.1e-63 247.3 216 60.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.1e-63 247.3 217 59.9
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-63 246.1 215 59.5
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-63 246.1 215 59.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.5e-63 246.1 216 59.7
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 4.3e-63 245.4 218 60.6
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 5.6e-63 245.0 222 59.0
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 5.6e-63 245.0 222 58.6
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 5.6e-63 245.0 224 57.1
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 7.3e-63 244.6 216 61.6
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.2e-62 243.8 229 59.0
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.2e-62 243.8 218 60.6
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.6e-62 243.4 219 59.4
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 2.8e-62 242.7 234 56.8
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 2.8e-62 242.7 220 60.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.6e-62 242.3 236 55.9
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 4.7e-62 241.9 221 57.9
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 6.2e-62 241.5 232 57.3
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 8.1e-62 241.1 230 57.8
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.1e-61 240.7 225 58.7
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.1e-61 240.7 216 60.2
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.4e-61 240.4 219 58.0
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.4e-61 240.4 226 58.0
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.8e-61 240.0 212 58.5
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 2.3e-61 239.6 214 58.9
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.1e-61 239.2 203 60.1
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 4.0e-61 238.8 232 56.9
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.2e-61 238.4 222 59.0
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.2e-61 238.4 236 54.7
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.2e-60 237.3 223 58.7
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 2.6e-60 236.1 237 54.4
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.4e-60 235.7 206 60.2
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.4e-60 235.3 194 61.9
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.8e-60 235.0 237 54.4
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.8e-60 235.0 237 54.4
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 7.6e-60 234.6 221 56.6
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.3e-59 233.8 237 54.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.3e-59 233.8 237 54.0
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.7e-59 233.4 203 59.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.7e-59 233.4 236 53.8
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.2e-59 233.0 233 53.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 6.4e-59 231.5 237 54.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 2.4e-58 229.6 237 52.7
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.4e-58 229.6 234 54.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 7.1e-58 228.0 223 56.5
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.6e-57 226.9 223 55.6
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.6e-57 226.9 232 56.0
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 6.0e-57 224.9 199 59.8
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.3e-56 223.8 232 55.2
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 3.9e-56 222.2 235 54.0
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.5e-55 220.3 188 62.2
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 2.8e-54 216.1 235 53.2
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 4.7e-54 215.3 219 54.8
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-52 210.7 223 56.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.0e-52 209.9 265 49.1
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.0e-52 209.9 265 49.1
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.8e-52 208.4 177 61.0
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 5.8e-52 208.4 220 50.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 4.9e-51 205.3 219 50.7
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 5.4e-50 201.8 150 69.3
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.1e-47 194.1 156 62.2
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 8.1e-46 188.0 211 50.7
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.1e-45 187.6 146 63.0
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 9.9e-44 181.0 146 62.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 3.8e-43 179.1 156 56.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 8.4e-43 177.9 149 60.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 6.6e-40 168.3 136 64.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.3e-38 164.1 129 65.1
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.8e-37 160.2 227 40.5
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.4e-37 159.8 224 41.1
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 6.9e-37 158.3 156 54.5
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.6e-33 147.1 169 46.2
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 2.7e-33 146.4 122 61.5
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 7.9e-33 144.8 147 52.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 4.0e-29 132.5 169 39.6
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 4.0e-29 132.5 219 35.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.3e-27 127.5 229 37.6
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 6.5e-27 125.2 112 57.1
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 1.4e-26 124.0 188 36.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.2e-26 122.5 159 41.5
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.0e-24 117.9 165 39.4
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.9e-23 113.6 208 34.6
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 4.2e-18 95.9 91 59.3
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.1e-15 87.8 65 61.5
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.5e-15 87.4 176 34.1
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.9e-15 87.0 48 77.1
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.6e-14 84.0 49 71.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 4.8e-14 82.4 49 73.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 4.8e-14 82.4 47 74.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 8.2e-14 81.6 88 47.7
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 3.4e-12 76.3 79 50.6
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 7.7e-12 75.1 79 51.9
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.4e-10 70.9 52 63.5
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 4.2e-10 69.3 44 75.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 3.0e-08 63.2 59 59.3
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.0e-07 60.5 36 72.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 7.4e-07 58.5 33 69.7
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 1.3e-06 57.8 33 69.7


User provided reference genes

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