Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 6.9e-31 136.7 72 100.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.2e-19 99.4 65 80.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 2.5e-17 91.7 70 74.3
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 2.5e-17 91.7 69 72.5
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 9.7e-17 89.7 69 66.7
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.3e-16 87.0 54 79.6
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.4e-15 85.1 58 75.9
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.1e-15 84.3 61 70.5
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 3.4e-14 81.3 59 69.5
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 3.4e-14 81.3 51 76.5
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 5.9e-14 80.5 60 73.3
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.9e-14 80.5 58 74.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 5.9e-14 80.5 57 71.9
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.0e-13 79.7 59 74.6
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.3e-13 79.3 63 65.1
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 5.0e-13 77.4 58 69.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 6.5e-13 77.0 64 65.6
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 8.5e-13 76.6 66 63.6
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.1e-12 76.3 56 66.1
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.4e-12 75.9 79 51.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.4e-12 75.9 70 60.0
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.9e-12 75.5 71 60.6
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.9e-12 75.5 71 60.6
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.9e-12 75.5 68 61.8
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 2.5e-12 75.1 68 58.8
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 5.5e-12 73.9 69 59.4
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 5.5e-12 73.9 64 62.5
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 7.2e-12 73.6 49 73.5
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 9.4e-12 73.2 70 55.7
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.2e-11 72.8 64 60.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.2e-11 72.8 57 63.2
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.6e-11 72.4 57 64.9
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.1e-11 72.0 67 59.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.1e-11 72.0 57 63.2
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.1e-11 72.0 58 67.2
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.6e-11 71.2 52 69.2
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.6e-11 70.9 60 60.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 6.1e-11 70.5 49 67.3
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 6.1e-11 70.5 66 56.1
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 7.9e-11 70.1 49 69.4
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 7.9e-11 70.1 64 64.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.0e-10 69.7 51 66.7
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.0e-10 69.7 65 58.5
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.4e-10 69.3 61 65.6
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.4e-10 69.3 60 65.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.8e-10 68.9 54 59.3
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.8e-10 68.9 54 59.3
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.8e-10 68.9 54 59.3
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 2.3e-10 68.6 67 59.7
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.3e-10 68.6 68 50.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.0e-10 68.2 51 62.7
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.9e-10 67.8 55 61.8
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.9e-10 67.8 57 64.9
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 3.9e-10 67.8 64 56.2
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 5.1e-10 67.4 64 51.6
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.7e-10 67.0 54 57.4
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.7e-10 67.0 54 57.4
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 6.7e-10 67.0 57 66.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 8.8e-10 66.6 49 69.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.1e-09 66.2 57 61.4
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.5e-09 65.9 66 59.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.5e-09 65.9 46 67.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-09 65.9 60 63.3
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.5e-09 65.1 68 51.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.5e-09 65.1 59 59.3
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 2.5e-09 65.1 59 52.5
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 5.7e-09 63.9 55 56.4
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 5.7e-09 63.9 58 65.5
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 5.7e-09 63.9 44 70.5
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.3e-08 62.8 72 54.2
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.7e-08 62.4 66 54.5
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.2e-08 62.0 50 66.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.2e-08 62.0 57 56.1
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 2.8e-08 61.6 59 62.7
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 2.8e-08 61.6 43 67.4
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 3.7e-08 61.2 57 59.6
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 6.3e-08 60.5 65 50.8
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 6.3e-08 60.5 43 67.4
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.4e-07 59.3 64 48.4
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 2.4e-07 58.5 37 70.3
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.1e-07 58.2 48 56.2
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 4.1e-07 57.8 57 57.9
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 5.3e-07 57.4 57 52.6
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 6.9e-07 57.0 44 59.1
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 9.1e-07 56.6 43 62.8
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.2e-06 56.2 72 52.8
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-06 55.8 48 62.5
MSTRG.12567 Avicennia marina HOM05D007833 ORTHO05D009855 7.7e-06 53.5 44 61.4
HanXRQChr10g0282781 Helianthus annuus HOM05D007833 ORTHO05D009855 7.7e-06 53.5 38 68.4


User provided reference genes

Program Settings