Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1862.0 945 100.0
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1860.5 945 99.9
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1522.7 943 81.5
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1516.9 937 82.1
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1478.8 958 79.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1417.9 943 76.6
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1309.7 952 70.1
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1309.3 950 70.5
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1281.2 950 67.2
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1278.8 946 70.1
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1278.8 940 69.3
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1270.8 957 67.2
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1266.5 939 68.3
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1262.3 954 67.3
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1257.7 943 68.3
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1257.3 943 66.7
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1255.4 942 68.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1254.2 948 68.1
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1253.0 947 66.5
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1251.9 951 67.5
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1251.5 947 66.4
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1250.7 946 67.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1250.3 929 68.5
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1248.8 930 67.4
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1248.0 938 67.0
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1246.5 948 67.7
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1246.1 948 66.2
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1244.2 957 66.9
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1241.1 949 66.9
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1240.7 930 68.4
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1238.0 957 66.8
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1232.6 957 66.9
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1231.1 930 68.5
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1231.1 956 66.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1229.5 952 66.5
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1226.8 935 66.2
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1224.9 928 67.9
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1221.5 959 65.2
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1221.5 937 66.0
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1216.4 937 67.0
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1215.3 933 67.1
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 941 64.5
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1213.7 958 65.7
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1211.1 933 66.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1209.5 928 67.6
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1199.9 995 64.6
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1189.5 930 64.4
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1189.1 938 65.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1188.3 844 72.0
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 942 64.8
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1174.8 944 63.8
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 932 63.8
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1167.9 950 63.1
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1167.5 949 64.1
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1157.1 928 66.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1157.1 943 62.1
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1154.0 931 63.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1152.5 946 63.7
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1151.3 938 63.3
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1149.8 939 62.1
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1149.4 913 63.9
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1149.0 944 62.3
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 940 61.8
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 916 63.8
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1147.1 939 62.0
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1137.5 935 61.4
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1137.5 935 61.4
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 0.0e+00 1135.6 912 64.1
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1134.4 942 61.5
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1132.9 933 61.8
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1129.0 935 61.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1127.9 996 59.6
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1125.9 949 61.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1116.7 830 71.3
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1116.3 957 59.9
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1112.8 934 61.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 0.0e+00 1112.8 773 73.2
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1102.0 954 60.3
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1093.6 834 67.0
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 0.0e+00 1092.4 944 61.3
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 0.0e+00 1086.2 944 61.1
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 0.0e+00 1079.7 944 60.7
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 0.0e+00 1078.2 938 60.9
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.5e-298 1029.6 940 58.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.6e-295 1018.8 939 57.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.2e-294 1015.8 803 63.6
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.1e-288 996.9 685 73.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 4.2e-285 984.9 940 56.5
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.2e-276 956.8 737 66.9
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 6.7e-267 924.5 818 57.1
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 3.1e-248 862.4 942 50.0
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.9e-229 800.0 938 47.8
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 5.5e-229 798.5 653 63.4
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 4.0e-195 686.0 943 42.2
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 5.2e-195 685.6 980 42.8
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.5e-186 657.5 488 66.4
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 9.2e-184 648.3 954 40.7
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.3e-177 627.9 432 76.2
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.9e-174 616.3 411 76.6
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 4.2e-152 543.1 422 64.0
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.6e-151 541.2 736 43.6
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.6e-146 523.9 888 36.8
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 3.0e-142 510.4 463 61.6
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-139 500.7 428 66.4
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 4.1e-131 473.4 887 35.6
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.7e-129 468.0 453 58.5
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.6e-127 461.5 909 33.2
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.2e-121 441.0 265 82.3
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.8e-68 264.2 200 66.5
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.4e-54 219.2 143 76.2
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.8e-49 202.2 464 33.2
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 2.5e-43 181.8 344 36.0
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.9e-42 176.8 350 35.1
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.2e-36 158.7 344 32.6
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.5e-35 155.2 240 44.6
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.4e-30 138.7 140 56.4
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-30 138.3 118 61.0
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-30 138.3 131 56.5
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.7e-25 120.6 131 54.2
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.8e-25 120.2 64 90.6
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.3e-23 116.3 64 89.1
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 8.2e-23 113.6 129 47.3
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.7e-20 105.9 137 46.7
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 1.7e-20 105.9 67 74.6
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.5e-20 103.6 61 88.5
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.4e-19 102.8 61 90.2
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.2e-19 101.3 73 63.0
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 5.5e-19 100.9 73 63.0
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-18 99.8 73 63.0
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 7.9e-18 97.1 113 45.1
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-17 96.7 73 60.3
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.4e-16 91.3 81 55.6
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.5e-13 81.6 241 31.5
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-12 80.1 46 76.1
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.7e-10 72.0 173 30.1
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 4.7e-10 71.2 55 56.4
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 6.1e-10 70.9 69 47.8
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.0e-09 68.6 55 56.4
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-08 65.9 55 52.7
Pp3c19_1150 Physcomitrium patens HOM05D004953 ORTHO05D006193 4.4e-08 64.7 90 36.7
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.7e-07 62.8 60 61.7
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.7e-07 62.8 38 73.7
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.2e-07 62.4 38 76.3
PRCOL_00006857 Prasinoderma coloniale HOM05D004953 ORTHO05D006193 7.0e-06 57.4 135 26.7


User provided reference genes

Program Settings