Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 6.8e-66 253.8 126 100.0
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 5.8e-49 197.6 104 88.5
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.7e-48 196.1 104 88.5
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.4e-47 193.0 104 87.5
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-47 192.6 104 87.5
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.9e-47 192.6 104 87.5
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.9e-47 192.6 104 87.5
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 2.4e-47 192.2 104 89.4
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 4.1e-47 191.4 104 87.5
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 7.0e-47 190.7 104 86.5
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 1.6e-46 189.5 110 82.7
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.6e-46 189.5 116 80.2
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 1.6e-46 189.5 104 86.5
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 1.6e-46 189.5 104 87.5
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.6e-46 189.5 104 85.6
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 3.5e-46 188.3 104 86.5
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 4.6e-46 188.0 103 86.4
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 6.0e-46 187.6 104 87.5
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.0e-46 187.6 104 84.6
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.0e-46 187.6 104 84.6
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.0e-46 187.6 104 84.6
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 7.8e-46 187.2 104 86.5
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 1.0e-45 186.8 104 86.5
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 1.3e-45 186.4 104 84.6
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.3e-45 186.4 107 86.0
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 1.3e-45 186.4 104 85.6
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 1.7e-45 186.0 110 81.8
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 2.3e-45 185.7 104 84.6
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 3.0e-45 185.3 105 85.7
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 3.9e-45 184.9 105 84.8
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 3.9e-45 184.9 104 84.6
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.0e-45 184.5 106 86.8
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 6.6e-45 184.1 104 83.7
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 8.6e-45 183.7 104 84.6
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.1e-44 183.3 104 85.6
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 1.1e-44 183.3 105 84.8
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.1e-44 183.3 104 81.7
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.5e-44 183.0 104 84.6
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.3e-44 181.4 106 83.0
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.3e-44 181.4 106 83.0
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 4.3e-44 181.4 105 84.8
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 5.6e-44 181.0 105 81.9
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 5.6e-44 181.0 104 83.7
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 5.6e-44 181.0 106 83.0
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 7.3e-44 180.6 105 83.8
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 7.3e-44 180.6 104 83.7
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 9.5e-44 180.3 105 81.0
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 9.5e-44 180.3 104 80.8
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 9.5e-44 180.3 104 83.7
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 1.2e-43 179.9 104 80.8
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.2e-43 179.9 105 82.9
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 1.6e-43 179.5 107 80.4
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 2.1e-43 179.1 106 84.9
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 2.1e-43 179.1 105 82.9
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 2.8e-43 178.7 106 82.1
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 2.8e-43 178.7 105 80.0
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 2.8e-43 178.7 104 80.8
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 2.8e-43 178.7 105 83.8
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 3.6e-43 178.3 106 82.1
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 3.6e-43 178.3 104 82.7
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 3.6e-43 178.3 103 80.6
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 3.6e-43 178.3 105 81.0
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 3.6e-43 178.3 104 81.7
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 3.6e-43 178.3 105 81.9
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 4.7e-43 177.9 104 81.7
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 4.7e-43 177.9 104 81.7
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 6.2e-43 177.6 105 81.9
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.1e-42 176.8 104 82.7
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 1.4e-42 176.4 99 86.9
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 1.4e-42 176.4 104 79.8
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 1.8e-42 176.0 106 84.0
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 2.3e-42 175.6 104 78.8
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 2.3e-42 175.6 108 77.8
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 3.1e-42 175.3 105 81.9
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 4.0e-42 174.9 106 81.1
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 4.0e-42 174.9 105 81.9
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 4.0e-42 174.9 105 80.0
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 4.0e-42 174.9 110 75.5
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 5.2e-42 174.5 104 78.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 6.8e-42 174.1 104 80.8
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 8.9e-42 173.7 100 79.0
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 8.9e-42 173.7 105 81.0
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 8.9e-42 173.7 107 83.2
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 8.9e-42 173.7 115 76.5
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 1.2e-41 173.3 106 81.1
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 1.2e-41 173.3 106 82.1
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 1.5e-41 172.9 106 80.2
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 2.0e-41 172.6 106 77.4
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 2.0e-41 172.6 106 77.4
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 2.6e-41 172.2 106 81.1
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 2.6e-41 172.2 106 81.1
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 7.5e-41 170.6 104 76.9
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 7.5e-41 170.6 105 79.0
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 9.8e-41 170.2 106 80.2
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 1.3e-40 169.9 111 75.7
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.7e-40 169.5 105 79.0
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.7e-40 169.5 106 80.2
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 2.2e-40 169.1 110 74.5
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 2.2e-40 169.1 106 79.2
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 2.9e-40 168.7 97 82.5
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 3.7e-40 168.3 106 79.2
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 3.7e-40 168.3 106 80.2
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 8.3e-40 167.2 104 76.9
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.1e-39 166.8 105 77.1
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.4e-39 166.4 106 79.2
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.4e-39 165.6 105 77.1
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.2e-39 165.2 105 77.1
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 4.1e-39 164.9 105 77.1
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 4.1e-39 164.9 105 77.1
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 5.4e-39 164.5 108 75.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 5.4e-39 164.5 108 75.0
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 7.1e-39 164.1 106 78.3
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 7.1e-39 164.1 105 76.2
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 7.1e-39 164.1 107 75.7
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-38 163.3 107 74.8
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.2e-38 163.3 107 74.8
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.2e-38 163.3 105 76.2
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.6e-38 162.9 104 74.0
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 2.1e-38 162.5 104 76.0
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 2.7e-38 162.2 105 75.2
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 2.7e-38 162.2 105 75.2
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 2.7e-38 162.2 105 75.2
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 2.7e-38 162.2 105 75.2
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 2.7e-38 162.2 105 75.2
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 3.5e-38 161.8 106 74.5
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 3.5e-38 161.8 105 75.2
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 4.6e-38 161.4 106 74.5
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 4.6e-38 161.4 106 74.5
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 4.6e-38 161.4 114 71.1
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 1.0e-37 160.2 108 75.0
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 1.0e-37 160.2 108 75.0
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 1.3e-37 159.8 108 74.1
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 2.3e-37 159.1 105 74.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.0e-37 158.7 104 72.1
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 8.6e-37 157.1 106 72.6
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 8.6e-37 157.1 106 72.6
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 8.6e-37 157.1 106 72.6
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 2.5e-36 155.6 118 67.8
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 5.6e-36 154.5 105 74.3
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 1.4e-34 149.8 105 71.4
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 3.6e-27 125.2 80 72.5
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 8.9e-26 120.6 79 75.9
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 8.9e-26 120.6 79 75.9
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 5.1e-21 104.8 72 68.1
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 1.5e-20 103.2 102 57.8
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 9.6e-20 100.5 52 92.3
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 4.0e-18 95.1 56 80.4
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 6.9e-18 94.4 82 59.8
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 8.4e-16 87.4 84 52.4
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 6.0e-14 81.3 105 48.6
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 8.7e-13 77.4 81 51.9
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 4.2e-07 58.5 77 46.8
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 3.5e-06 55.5 28 96.4


User provided reference genes

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