Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.8e-37 157.9 70 100.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-21 105.9 70 74.3
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-17 92.4 71 63.4
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.1e-08 62.0 53 50.9
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 3.6e-08 61.2 55 52.7
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 3.6e-08 61.2 30 76.7
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 6.1e-08 60.5 53 49.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 6.1e-08 60.5 53 49.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 6.1e-08 60.5 53 49.1
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.1e-08 60.5 53 49.1
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 6.1e-08 60.5 53 49.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 8.0e-08 60.1 55 49.1
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.0e-07 59.7 53 49.1
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.0e-07 59.7 30 73.3
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-07 59.3 29 75.9
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-07 59.3 30 73.3
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.8e-07 58.9 53 49.1
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.8e-07 58.9 30 73.3
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.3e-07 58.5 30 70.0
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 2.3e-07 58.5 30 73.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 3.0e-07 58.2 45 55.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.0e-07 58.2 53 47.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 3.0e-07 58.2 30 73.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 4.0e-07 57.8 30 70.0
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 4.0e-07 57.8 30 73.3
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 4.0e-07 57.8 30 70.0
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 4.0e-07 57.8 53 47.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 5.2e-07 57.4 53 47.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 5.2e-07 57.4 25 84.0
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 5.2e-07 57.4 29 72.4
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 5.2e-07 57.4 30 70.0
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 6.7e-07 57.0 30 70.0
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 6.7e-07 57.0 30 70.0
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 6.7e-07 57.0 30 70.0
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 8.8e-07 56.6 53 47.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 8.8e-07 56.6 30 70.0
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.2e-06 56.2 30 70.0
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.2e-06 56.2 30 70.0
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.5e-06 55.8 53 45.3
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.5e-06 55.8 25 80.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-06 55.8 41 56.1
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.5e-06 55.8 30 66.7
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.0e-06 55.5 67 44.8
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.0e-06 55.5 30 66.7
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 2.0e-06 55.5 30 66.7
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.0e-06 55.5 30 66.7
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.0e-06 55.5 53 45.3
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 2.0e-06 55.5 30 66.7
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.6e-06 55.1 30 66.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.6e-06 55.1 28 71.4
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 2.6e-06 55.1 48 50.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 3.3e-06 54.7 24 83.3
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.3e-06 54.7 24 83.3
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.3e-06 54.7 30 66.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 7.5e-06 53.5 30 63.3
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 7.5e-06 53.5 25 80.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.7e-06 53.1 23 82.6
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 9.7e-06 53.1 25 76.0
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 9.7e-06 53.1 25 76.0


User provided reference genes

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