Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.8e-143 511.1 313 100.0
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 5.9e-95 351.7 311 65.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-93 347.4 313 67.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.1e-92 343.2 300 67.0
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.0e-91 340.9 300 66.7
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 4.0e-91 339.0 311 73.3
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.2e-89 333.2 312 72.4
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.4e-88 329.7 300 62.3
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 7.0e-88 328.2 312 66.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 9.2e-88 327.8 300 62.3
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-86 323.9 296 67.9
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.3e-86 323.9 313 68.1
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.7e-86 323.6 302 63.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.5e-85 320.5 265 66.8
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.5e-85 320.5 266 77.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.5e-85 320.5 306 69.3
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.3e-85 318.2 300 64.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.6e-84 317.0 313 71.9
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.8e-84 316.2 300 63.0
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 3.6e-84 315.8 313 66.8
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 4.7e-84 315.5 296 66.6
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 4.7e-84 315.5 266 66.2
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.0e-83 314.3 300 62.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.8e-83 313.5 311 59.5
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 8.9e-83 311.2 311 61.7
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 8.9e-83 311.2 301 70.1
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.2e-82 310.8 297 61.6
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.5e-82 310.5 311 66.9
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.6e-82 309.7 311 66.2
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 3.4e-82 309.3 285 67.7
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 4.4e-82 308.9 309 57.9
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 4.4e-82 308.9 311 63.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 5.8e-82 308.5 315 65.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.9e-81 306.2 268 74.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.9e-81 306.2 311 69.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.4e-81 305.1 295 70.8
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 8.3e-81 304.7 269 71.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.1e-80 304.3 269 62.8
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.4e-80 303.9 267 74.9
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 7.0e-80 301.6 311 66.2
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-79 300.1 296 67.6
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.0e-79 300.1 297 66.0
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.7e-79 299.7 311 58.5
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.0e-79 298.5 296 67.2
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.0e-79 298.5 296 67.2
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.8e-79 298.1 294 66.3
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.3e-78 297.4 295 69.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.3e-78 296.6 311 60.1
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.0e-78 296.2 293 70.6
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.0e-78 296.2 255 71.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.6e-78 295.0 293 70.6
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.6e-78 295.0 296 67.2
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 6.6e-78 295.0 266 73.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 7.3e-77 291.6 266 68.8
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 9.5e-77 291.2 311 62.1
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.2e-76 290.8 263 72.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 4.7e-76 288.9 266 66.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.1e-75 287.7 311 57.9
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.3e-75 286.6 266 63.2
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.1e-75 286.2 268 63.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 5.2e-75 285.4 311 59.8
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 6.8e-75 285.0 266 64.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 8.9e-75 284.6 267 67.4
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.4e-74 282.7 265 61.9
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.5e-74 281.6 270 65.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.8e-74 281.2 300 60.3
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.2e-73 280.0 298 55.7
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.2e-73 280.0 313 57.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.9e-73 279.6 293 61.8
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.4e-73 278.5 298 58.7
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 6.4e-73 278.5 296 65.2
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 8.3e-73 278.1 269 59.5
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.1e-72 277.7 305 57.7
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.4e-72 276.6 264 59.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.2e-72 276.2 313 58.5
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.2e-72 276.2 269 59.1
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.1e-72 275.8 312 54.5
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.4e-72 275.4 269 59.1
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 7.0e-72 275.0 302 57.9
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 7.0e-72 275.0 307 59.9
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 9.2e-72 274.6 299 55.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.6e-71 273.9 265 60.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.7e-71 273.1 303 58.4
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.7e-71 273.1 303 58.4
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.7e-71 273.1 303 58.4
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.5e-71 272.7 296 54.4
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 4.6e-71 272.3 304 58.9
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 6.0e-71 271.9 297 57.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 7.8e-71 271.6 267 64.4
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-70 270.8 267 62.5
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.3e-70 270.8 269 58.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-70 270.4 311 62.1
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.7e-70 270.4 301 56.5
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 3.0e-70 269.6 264 62.9
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.5e-69 267.3 303 57.4
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-69 266.9 302 56.0
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-69 266.9 269 63.2
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.9e-69 266.9 305 53.4
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.9e-69 266.9 302 58.6
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 5.6e-69 265.4 226 63.3
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-68 264.2 302 62.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-68 263.8 269 62.8
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.6e-68 263.8 269 64.3
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.6e-68 263.8 269 61.7
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.7e-68 262.3 298 54.7
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.1e-67 261.2 266 57.9
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.4e-67 260.8 265 57.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.8e-67 260.4 266 56.4
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.1e-67 259.6 294 56.5
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 4.0e-67 259.2 295 57.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 8.9e-67 258.1 304 61.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.2e-66 257.7 293 65.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 3.4e-66 256.1 304 60.9
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.2e-65 253.4 242 63.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 6.4e-65 251.9 305 51.5
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.5e-63 246.1 266 64.3
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.5e-63 246.1 303 61.1
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.5e-63 246.1 269 56.1
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.3e-62 244.2 302 56.0
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.3e-62 243.4 298 60.7
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.0e-62 243.0 266 68.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.5e-61 240.0 306 48.4
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.3e-61 239.6 257 68.9
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-60 237.7 193 74.1
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.8e-59 233.8 312 53.5
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.4e-58 229.6 312 47.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 4.4e-58 229.2 300 54.7
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 1.3e-57 227.6 259 60.6
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 2.9e-57 226.5 271 58.3
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.7e-54 217.2 257 55.6
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 3.0e-54 216.5 250 60.8
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 4.7e-52 209.1 261 56.7
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.8e-49 199.5 213 60.1
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 6.0e-47 192.2 217 55.8
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 3.9e-46 189.5 313 48.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 6.6e-46 188.7 245 51.4
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-44 184.5 269 46.1
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.0e-43 179.5 106 79.2
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 5.3e-43 179.1 244 45.9
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.4e-42 176.4 191 65.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 4.5e-42 176.0 148 74.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-41 173.7 285 50.2
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-41 173.7 266 45.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 9.3e-40 168.3 255 40.8
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.6e-39 166.0 190 70.5
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-38 164.1 189 61.9
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.5e-37 161.0 153 56.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 9.6e-37 158.3 129 62.0
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.8e-35 154.1 265 40.0
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.4e-35 153.7 267 42.7
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.1e-35 153.3 182 67.6
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 4.0e-35 152.9 106 65.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.3e-33 147.9 136 52.9
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.6e-31 141.0 177 53.7
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.6e-31 141.0 177 53.7
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.7e-31 140.2 290 41.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.9e-29 134.0 172 52.9
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.6e-28 131.0 128 66.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 2.1e-28 130.6 262 38.9
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.8e-27 127.5 258 33.7
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 6.9e-27 125.6 287 34.8
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.5e-26 124.4 106 61.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.8e-25 119.8 91 68.1
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.8e-25 119.8 175 46.9
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.1e-22 109.4 225 39.1
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 8.7e-22 108.6 245 35.9
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.8e-20 103.6 64 78.1
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.4e-19 101.3 215 34.4
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.1e-19 100.1 199 39.7
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.0e-17 95.1 75 64.0
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.5e-16 90.5 122 52.5
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.6e-15 86.7 91 63.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-14 84.7 88 60.2
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.5e-13 81.3 251 30.7
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.5e-13 80.5 44 86.4
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 4.8e-12 76.3 70 64.3
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 4.1e-11 73.2 266 29.3
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 5.0e-09 66.2 60 55.0
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.1e-07 60.8 117 39.3
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 3.0e-06 57.0 118 40.7
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 3.9e-06 56.6 112 40.2


User provided reference genes

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