Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 6.5e-293 1010.0 509 100.0
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 4.5e-225 784.6 577 69.0
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 4.9e-224 781.2 548 70.1
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.7e-222 775.4 549 70.3
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 6.0e-222 774.2 546 70.7
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.8e-221 772.7 550 70.4
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 6.7e-221 770.8 527 72.9
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.5e-220 768.8 547 70.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.3e-220 768.1 549 69.9
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.3e-219 766.5 550 69.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.1e-219 765.8 543 69.8
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 2.8e-219 765.4 564 70.6
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.5e-217 759.6 550 69.5
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 9.3e-215 750.4 551 69.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 3.5e-214 748.4 547 67.8
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 2.3e-213 745.7 551 67.9
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.7e-213 743.8 549 67.4
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 3.3e-212 741.9 546 67.9
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 9.6e-212 740.3 549 67.0
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.8e-211 738.8 549 67.2
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 3.7e-211 738.4 542 67.5
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.8e-211 738.0 551 68.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 6.2e-211 737.6 578 64.2
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.4e-210 735.7 544 67.6
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.2e-209 733.4 546 66.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.5e-209 733.0 552 66.8
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.7e-208 729.6 546 67.0
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.9e-208 728.8 550 66.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 4.9e-208 728.0 541 69.1
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.1e-207 726.9 546 67.6
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.4e-207 726.5 550 67.6
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.6e-206 723.0 467 76.0
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 4.6e-206 721.5 546 66.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 6.7e-205 717.6 547 64.9
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 8.7e-205 717.2 548 66.4
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 1.1e-204 716.8 559 66.4
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.1e-204 716.8 546 66.3
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 6.3e-203 711.1 546 66.3
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 2.4e-202 709.1 542 65.9
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.5e-201 706.4 551 65.7
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 4.5e-201 704.9 543 66.5
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 5.9e-201 704.5 544 63.2
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.9e-200 702.2 558 63.1
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 5.0e-200 701.4 542 65.5
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.9e-199 699.5 604 63.1
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.6e-198 696.4 546 65.0
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.3e-197 692.6 542 63.7
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.1e-196 690.3 547 63.3
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 9.7e-196 687.2 547 62.9
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.7e-195 685.3 516 67.8
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 9.1e-194 680.6 468 71.6
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.9e-192 675.6 546 61.9
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 3.8e-192 675.2 566 61.3
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 3.6e-190 668.7 519 63.0
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 6.1e-190 667.9 545 62.0
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.4e-189 666.8 554 61.9
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.8e-189 666.4 544 63.8
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 4.4e-188 661.8 510 64.3
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 9.7e-188 660.6 539 61.8
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.2e-187 659.4 549 61.0
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 7.0e-186 654.4 547 60.7
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 5.9e-185 651.4 545 60.4
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 7.7e-185 651.0 551 60.8
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 6.5e-184 647.9 547 60.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 8.5e-184 647.5 544 61.9
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.1e-183 647.1 544 60.5
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.4e-183 646.7 543 60.4
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.9e-183 646.4 544 62.1
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.9e-183 646.4 499 67.3
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 3.2e-183 645.6 544 61.8
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 5.5e-183 644.8 540 57.4
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.3e-179 633.6 545 59.1
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.2e-179 632.9 545 59.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 3.7e-179 632.1 545 59.1
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 4.1e-178 628.6 545 58.9
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 4.5e-177 625.2 543 58.9
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 3.2e-175 619.0 546 58.2
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.8e-173 613.2 548 58.0
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.5e-167 593.6 637 54.6
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 5.7e-164 581.6 528 57.4
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 9.5e-159 564.3 500 59.8
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 1.5e-156 557.0 548 52.9
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.2e-155 553.1 533 56.1
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 3.8e-152 542.3 544 50.0
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.3e-149 533.1 595 50.3
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.3e-144 517.3 540 48.9
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 5.6e-143 511.9 549 50.8
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.2e-142 510.8 540 47.6
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.0e-141 505.8 547 49.9
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 4.0e-133 479.2 545 47.2
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.4e-125 454.1 550 43.8
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.0e-120 438.0 462 51.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 2.3e-120 436.8 301 69.4
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 1.2e-118 431.0 300 69.7
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 2.8e-118 429.9 316 67.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.1e-114 417.9 539 41.6
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 5.4e-106 389.0 301 65.1
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 3.4e-100 369.8 574 40.6
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 5.5e-98 362.5 577 41.1
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.1e-85 320.1 244 66.4
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 6.5e-83 312.4 437 37.5
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 2.1e-81 307.4 273 58.6
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.2e-75 287.3 239 62.3
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 8.8e-72 275.4 218 66.1
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 4.8e-70 269.6 218 65.6
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.0e-64 250.4 227 58.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.4e-63 246.5 213 59.2
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.4e-63 245.7 213 59.2
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 9.7e-63 245.4 386 39.9
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 5.9e-60 236.1 384 35.7
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.6e-57 226.9 179 61.5
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 8.5e-51 205.7 586 30.4
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 3.8e-43 180.3 186 50.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.7e-36 157.5 200 43.0
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.3e-34 150.6 85 77.6
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 8.0e-33 146.0 131 54.2
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.0e-28 129.8 342 29.2
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.6e-25 121.7 65 90.8
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.1e-21 106.3 104 53.8
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.8e-16 91.7 111 46.8
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 4.9e-14 83.6 47 80.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 7.8e-12 76.3 56 64.3
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 1.3e-11 75.5 56 64.3
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.2e-09 68.9 111 37.8
Actinidia31560 Actinidia chinensis HOM05D006175 ORTHO05D008081 2.1e-09 68.2 60 65.0
CAN.G93.25 Capsicum annuum HOM05D000544 ORTHO05D000137 9.9e-07 59.3 33 75.8
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 9.9e-07 59.3 51 52.9


User provided reference genes

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