Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011604 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D003870 2.6e-44 181.8 102 100.0
arahy.Tifrunner.gnm1.ann1.VJJ5XE Arachis hypogaea HOM05D000964 ORTHO05D003870 2.1e-17 92.4 90 54.4
PGSC0003DMG400015059 Solanum tuberosum HOM05D000964 ORTHO05D003870 1.8e-16 89.4 113 47.8
COL.COLO4_03143 Corchorus olitorius HOM05D000964 ORTHO05D003870 3.7e-14 81.6 84 53.6
Oeu058361.1 Olea europaea HOM05D000964 ORTHO05D003870 4.1e-13 78.2 49 75.5
Nitab4.5_0000173g0060 Nicotiana tabacum HOM05D000964 ORTHO05D003870 9.2e-13 77.0 47 74.5
arahy.Tifrunner.gnm1.ann1.ZZ7UGR Arachis hypogaea HOM05D000964 ORTHO05D003870 1.6e-12 76.3 53 67.9
Cfa021572 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.6e-12 76.3 49 75.5
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 2.0e-12 75.9 49 73.5
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 2.0e-12 75.9 49 73.5
Oeu054719.1 Olea europaea HOM05D000964 ORTHO05D003870 2.0e-12 75.9 49 75.5
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 2.0e-12 75.9 49 73.5
arahy.Tifrunner.gnm1.ann1.8K1QWD Arachis hypogaea HOM05D000964 ORTHO05D003870 2.7e-12 75.5 49 69.4
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 2.7e-12 75.5 49 73.5
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 3.5e-12 75.1 49 71.4
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 4.6e-12 74.7 49 69.4
arahy.Tifrunner.gnm1.ann1.PR6ML0 Arachis hypogaea HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 69.4
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 69.4
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 71.4
CAN.G327.19 Capsicum annuum HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 71.4
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 71.4
Eucgr.E03029 Eucalyptus grandis HOM05D000964 ORTHO05D003870 4.6e-12 74.7 59 59.3
Nitab4.5_0004430g0030 Nicotiana tabacum HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 71.4
Nitab4.5_0027992g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 4.6e-12 74.7 49 71.4
Oeu028770.1 Olea europaea HOM05D000964 ORTHO05D003870 6.0e-12 74.3 49 71.4
Atru.chr4.2439 Acer truncatum HOM05D000964 ORTHO05D003870 7.8e-12 73.9 49 69.4
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 7.8e-12 73.9 49 71.4
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 7.8e-12 73.9 49 71.4
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 7.8e-12 73.9 49 71.4
Migut.D01435 Erythranthe guttata HOM05D000964 ORTHO05D003870 1.0e-11 73.6 49 73.5
Sed0000218 Sechium edule HOM05D000964 ORTHO05D003870 1.0e-11 73.6 49 71.4
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 1.0e-11 73.6 49 71.4
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 1.3e-11 73.2 49 67.3
Nn002s41360 Nelumbo nucifera HOM05D000964 ORTHO05D003870 1.7e-11 72.8 48 72.9
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 2.3e-11 72.4 49 67.3
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 2.3e-11 72.4 49 69.4
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 2.3e-11 72.4 49 69.4
CAN.G219.34 Capsicum annuum HOM05D000964 ORTHO05D003870 3.0e-11 72.0 45 73.3
Solyc00g500156.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 3.0e-11 72.0 49 67.3
Solyc09g050063.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 3.0e-11 72.0 49 67.3
Ah.10g027350 Amaranthus hybridus HOM05D000964 ORTHO05D003870 3.9e-11 71.6 49 67.3
Ah.10g028970 Amaranthus hybridus HOM05D000964 ORTHO05D003870 3.9e-11 71.6 49 67.3
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 3.9e-11 71.6 49 65.3
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
AL2G21710 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
C02p60160 Brassica napus HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC29t60486H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BolSC49t61164H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 5.0e-11 71.2 49 69.4
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 5.0e-11 71.2 49 69.4
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 69.4
Lj2C1237T33 Lonicera japonica HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 67.3
Lju5009C0T12 Lonicera japonica HOM05D000964 ORTHO05D003870 5.0e-11 71.2 49 67.3
CAN.G127.14 Capsicum annuum HOM05D000964 ORTHO05D003870 6.6e-11 70.9 49 69.4
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 6.6e-11 70.9 49 65.3
Gohir.A05G086300 Gossypium hirsutum HOM05D000964 ORTHO05D003870 8.6e-11 70.5 49 65.3
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 8.6e-11 70.5 49 65.3
unitig_91.g26511 Utricularia gibba HOM05D000964 ORTHO05D003870 8.6e-11 70.5 49 67.3
BolC7t41710H Brassica oleracea HOM05D000964 ORTHO05D003870 1.1e-10 70.1 49 69.4
CAN.G1513.11 Capsicum annuum HOM05D000964 ORTHO05D003870 1.1e-10 70.1 49 67.3
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 1.1e-10 70.1 49 65.3
Nn1g05673 Nelumbo nucifera HOM05D000964 ORTHO05D003870 1.1e-10 70.1 49 67.3
Oeu012813.1 Olea europaea HOM05D000964 ORTHO05D003870 1.1e-10 70.1 48 68.8
Lalb_Chr25g0283361 Lupinus albus HOM05D000964 ORTHO05D003870 1.5e-10 69.7 49 65.3
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-10 69.3 49 63.3
Gohir.A12G025000 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.9e-10 69.3 49 63.3
Nitab4.5_0020737g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 1.9e-10 69.3 49 67.3
Psat6g111040 Pisum sativum HOM05D000964 ORTHO05D003870 1.9e-10 69.3 49 63.3
Gohir.A05G396500 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.5e-10 68.9 49 61.2
Gohir.D02G112733 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.5e-10 68.9 49 65.3
PGR111G0041 Punica granatum HOM05D000964 ORTHO05D003870 2.5e-10 68.9 49 67.3
Sc25g0002040 Simmondsia chinensis HOM05D000964 ORTHO05D003870 2.5e-10 68.9 49 67.3
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 2.5e-10 68.9 49 65.3
MELO3C029309.2 Cucumis melo HOM05D000964 ORTHO05D003870 3.3e-10 68.6 49 63.3
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 3.3e-10 68.6 49 63.3
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 3.3e-10 68.6 49 63.3
Migut.D01331 Erythranthe guttata HOM05D000964 ORTHO05D003870 5.6e-10 67.8 45 73.3
Migut.D01368 Erythranthe guttata HOM05D000964 ORTHO05D003870 5.6e-10 67.8 45 73.3
Gohir.D01G102112 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.6e-10 67.8 49 63.3
HanXRQChr11g0345271 Helianthus annuus HOM05D000964 ORTHO05D003870 5.6e-10 67.8 49 65.3
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 5.6e-10 67.8 49 63.3
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 7.3e-10 67.4 49 63.3
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 1.2e-09 66.6 47 66.0
Gorai.005G127600 Gossypium raimondii HOM05D000964 ORTHO05D003870 1.2e-09 66.6 49 63.3
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 1.6e-09 66.2 41 70.7
Gohir.D08G155850 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.8e-09 65.5 49 61.2
Lsat_1_v5_gn_5_61500 Lactuca sativa HOM05D000964 ORTHO05D003870 3.6e-09 65.1 49 63.3
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 3.6e-09 65.1 49 63.3
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 3.6e-09 65.1 49 63.3
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-09 64.7 49 63.3
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr00c0593g0576351 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-09 64.7 49 63.3
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-09 64.7 49 63.3
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
Phvul.001G047500 Phaseolus vulgaris HOM05D000964 ORTHO05D003870 4.7e-09 64.7 49 63.3
Cpa.g.sc54.35 Carica papaya HOM05D000964 ORTHO05D003870 6.2e-09 64.3 49 63.3
Psat4g041080 Pisum sativum HOM05D000964 ORTHO05D003870 8.0e-09 63.9 49 59.2
Lalb_Chr18g0049661 Lupinus albus HOM05D000964 ORTHO05D003870 1.4e-08 63.2 42 71.4
Hund28845 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.4e-08 63.2 99 39.4
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.3e-08 62.4 47 59.6
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 4.0e-08 61.6 49 61.2
HanXRQChr17g0544651 Helianthus annuus HOM05D000964 ORTHO05D003870 5.2e-08 61.2 49 61.2
Lsat_1_v5_gn_5_80201 Lactuca sativa HOM05D000964 ORTHO05D003870 5.2e-08 61.2 49 59.2
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 8.9e-08 60.5 45 62.2
EL10Ac4g08026 Beta vulgaris HOM05D000964 ORTHO05D004047 1.2e-07 60.1 48 62.5
CANSAT64G1468 Cannabis sativa HOM05D000964 ORTHO05D003870 1.2e-07 60.1 63 52.4
Nn3g20214 Nelumbo nucifera HOM05D000964 ORTHO05D003870 1.2e-07 60.1 62 56.5
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-07 59.3 45 62.2
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 2.0e-07 59.3 45 62.2
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-07 59.3 45 62.2
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.0e-07 59.3 45 62.2
CAN.G505.22 Capsicum annuum HOM05D000964 ORTHO05D003870 2.6e-07 58.9 49 61.2
Nitab4.5_0011882g0030 Nicotiana tabacum HOM05D000964 ORTHO05D003870 2.6e-07 58.9 38 73.7
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 7.5e-07 57.4 37 70.3
EL10Ac4g07913 Beta vulgaris HOM05D000964 ORTHO05D003870 1.7e-06 56.2 49 59.2
Gorai.008G027400 Gossypium raimondii HOM05D000964 ORTHO05D003870 1.7e-06 56.2 51 54.9
Lj2C1239T1 Lonicera japonica HOM05D000964 ORTHO05D003870 6.4e-06 54.3 38 63.2
Solyc01g017450.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 6.4e-06 54.3 42 64.3
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 8.3e-06 53.9 45 55.6


User provided reference genes

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