Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.0e-107 391.3 185 100.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.7e-79 298.9 147 95.9
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.7e-78 296.2 146 94.5
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 9.0e-75 283.9 146 89.0
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.3e-73 280.0 146 87.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 2.7e-71 272.3 146 84.9
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 6.0e-71 271.2 146 84.9
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 6.0e-71 271.2 146 84.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 7.9e-71 270.8 146 82.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 1.3e-70 270.0 146 83.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 2.3e-70 269.2 146 82.2
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 3.9e-70 268.5 146 80.8
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 6.7e-70 267.7 146 82.2
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 1.5e-69 266.5 146 81.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 2.1e-68 262.7 146 81.5
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 4.0e-67 258.5 146 80.1
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 9.0e-67 257.3 146 78.8
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 5.8e-66 254.6 145 80.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 1.7e-65 253.1 146 75.3
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 2.2e-65 252.7 146 76.0
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 4.9e-65 251.5 146 74.7
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 4.9e-65 251.5 146 75.3
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 4.9e-65 251.5 146 75.3
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 8.4e-65 250.8 148 74.3
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 8.4e-65 250.8 145 76.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 1.4e-64 250.0 145 75.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 1.4e-64 250.0 153 74.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 3.2e-64 248.8 146 74.7
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 3.2e-64 248.8 143 77.6
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 4.2e-64 248.4 146 76.0
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 7.1e-64 247.7 146 76.7
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 7.1e-64 247.7 146 75.3
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 9.3e-64 247.3 153 73.2
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.3e-64 247.3 146 76.7
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 9.3e-64 247.3 153 73.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 9.3e-64 247.3 146 76.0
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 1.2e-63 246.9 146 75.3
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 1.2e-63 246.9 143 76.2
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 1.6e-63 246.5 153 72.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.6e-63 246.5 145 77.2
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.6e-63 246.5 153 73.2
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.7e-63 245.7 146 76.0
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 2.7e-63 245.7 146 76.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 3.5e-63 245.4 144 75.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 6.0e-63 244.6 144 72.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 6.0e-63 244.6 144 72.2
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 6.0e-63 244.6 144 72.2
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 1.0e-62 243.8 146 76.7
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 1.8e-62 243.0 142 76.1
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 3.0e-62 242.3 146 73.3
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 3.0e-62 242.3 146 73.3
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 3.0e-62 242.3 153 71.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 3.0e-62 242.3 153 71.9
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 3.9e-62 241.9 146 71.9
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 3.9e-62 241.9 144 72.2
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 5.1e-62 241.5 146 73.3
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 6.7e-62 241.1 144 74.3
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 6.7e-62 241.1 153 71.9
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 6.7e-62 241.1 146 71.9
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 6.7e-62 241.1 141 73.8
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.1e-61 240.4 144 70.8
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.1e-61 240.4 144 71.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.1e-61 240.4 146 73.3
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 1.9e-61 239.6 148 73.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 3.3e-61 238.8 148 71.6
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 3.3e-61 238.8 154 73.4
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.3e-61 238.4 146 73.3
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 4.3e-61 238.4 146 73.3
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 7.4e-61 237.7 153 69.9
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 7.4e-61 237.7 153 70.6
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 9.6e-61 237.3 173 66.5
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 1.3e-60 236.9 153 70.6
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.3e-60 236.9 154 72.7
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 8.1e-60 234.2 153 69.3
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 8.1e-60 234.2 147 71.4
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 2.4e-59 232.6 146 69.9
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 2.4e-59 232.6 148 68.9
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 3.1e-59 232.3 148 68.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 3.1e-59 232.3 153 69.9
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 4.0e-59 231.9 147 72.8
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 5.3e-59 231.5 146 69.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 5.3e-59 231.5 146 69.2
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 2.0e-58 229.6 146 72.6
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 2.6e-58 229.2 148 68.2
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 2.6e-58 229.2 147 72.1
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 3.4e-58 228.8 152 68.4
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 3.4e-58 228.8 146 68.5
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.8e-58 228.0 152 69.1
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 1.7e-57 226.5 148 67.6
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.7e-57 226.5 173 59.5
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.9e-57 225.7 149 71.8
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 67.6
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 66.9
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 67.6
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 66.9
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 66.9
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 67.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 66.9
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 3.8e-57 225.3 148 67.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 1.1e-56 223.8 148 66.2
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 1.1e-56 223.8 148 66.2
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 1.4e-56 223.4 148 66.9
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 1.9e-56 223.0 148 65.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 1.9e-56 223.0 148 66.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.9e-56 223.0 167 61.7
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.2e-56 222.2 147 68.7
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 9.3e-56 220.7 147 64.6
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 2.7e-55 219.2 147 65.3
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.5e-50 201.8 126 73.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.1e-47 191.4 148 58.8
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 8.7e-46 187.6 147 56.5
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-45 187.2 146 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.4e-35 152.9 147 51.0
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 2.2e-33 146.4 168 42.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 5.0e-33 145.2 148 46.6
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 6.5e-33 144.8 146 48.6
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.7e-25 120.2 198 36.4
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.7e-15 85.5 156 30.1
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 3.0e-14 82.8 87 51.7
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 4.8e-12 75.5 43 65.1
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.1e-11 74.3 49 71.4
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.1e-08 64.3 43 58.1
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 9.5e-08 61.2 43 60.5
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 8.0e-07 58.2 53 54.7
Lsat_1_v5_gn_4_22880 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-06 57.0 40 67.5


User provided reference genes

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