Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.3e-137 493.0 247 100.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.9e-113 412.1 247 84.2
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.0e-110 402.1 245 84.1
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.3e-108 394.4 269 77.7
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.4e-107 393.3 245 81.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 5.9e-106 387.9 224 87.1
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.3e-105 386.7 255 80.0
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.7e-105 386.3 226 85.4
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 2.2e-105 386.0 221 87.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 6.5e-105 384.4 225 86.7
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.9e-104 382.9 227 85.0
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.6e-103 379.8 219 87.7
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.6e-103 379.8 233 82.8
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 8.0e-103 377.5 225 84.4
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 8.0e-103 377.5 244 79.9
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.0e-102 377.1 206 91.7
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.0e-102 377.1 256 75.8
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 3.9e-102 375.2 247 78.5
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 3.9e-102 375.2 220 85.0
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 6.7e-102 374.4 225 83.6
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 8.8e-102 374.0 244 79.1
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.5e-101 373.2 244 79.5
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 5.7e-101 371.3 231 80.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.7e-100 369.8 245 78.4
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 3.7e-100 368.6 245 78.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 6.3e-100 367.9 219 83.6
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 8.2e-100 367.5 235 80.0
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.8e-99 366.3 219 83.6
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 2.4e-99 365.9 229 81.7
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.4e-99 365.9 241 78.0
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.1e-99 365.5 231 79.2
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 3.1e-99 365.5 216 85.6
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 3.1e-99 365.5 216 84.7
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 4.1e-99 365.2 227 81.9
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 7.0e-99 364.4 231 81.8
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.2e-98 363.6 218 83.0
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.6e-98 363.2 218 82.6
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 7.7e-98 360.9 216 83.3
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 7.7e-98 360.9 218 82.6
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 7.7e-98 360.9 218 83.9
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.3e-97 360.1 244 76.2
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.7e-97 359.8 245 75.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.7e-97 359.8 227 80.2
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 3.8e-97 358.6 227 79.3
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 8.5e-97 357.5 238 76.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.1e-96 357.1 215 82.3
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.9e-96 356.3 219 80.4
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 3.2e-96 355.5 218 81.7
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 3.2e-96 355.5 227 78.9
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.5e-96 354.8 229 77.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 5.5e-96 354.8 223 80.3
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.2e-96 354.4 219 79.9
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 9.4e-96 354.0 227 78.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 2.7e-95 352.4 249 75.5
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 3.6e-95 352.1 226 77.4
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.7e-95 351.7 215 80.5
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.7e-95 351.7 245 75.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 6.1e-95 351.3 219 79.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 6.1e-95 351.3 243 73.7
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 8.0e-95 350.9 243 73.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.8e-94 349.7 234 76.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.8e-94 349.7 215 80.0
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.8e-94 349.7 225 76.4
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.8e-94 349.7 243 73.3
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 3.0e-94 349.0 243 74.1
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 6.8e-94 347.8 247 74.1
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 8.8e-94 347.4 234 75.2
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.2e-93 347.1 225 76.0
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.5e-93 346.7 224 76.8
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.5e-93 346.7 215 79.5
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 2.0e-93 346.3 218 81.7
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-92 343.6 216 77.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.7e-92 342.0 216 77.3
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 3.7e-92 342.0 242 72.3
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 6.3e-92 341.3 226 77.4
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.6e-90 336.7 211 77.3
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 2.0e-90 336.3 221 76.5
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.0e-90 336.3 235 71.9
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 5.9e-90 334.7 214 80.4
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 5.9e-90 334.7 248 72.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 5.9e-90 334.7 214 80.4
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 5.9e-90 334.7 203 81.8
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.0e-89 334.0 189 86.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.0e-89 334.0 245 72.7
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.9e-89 332.4 219 78.1
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.9e-89 332.4 205 83.4
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 3.8e-89 332.0 215 79.1
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 3.8e-89 332.0 214 79.4
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 3.8e-89 332.0 208 78.8
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.1e-88 330.5 211 80.1
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.9e-88 329.7 214 79.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.2e-88 328.6 207 76.3
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 5.5e-88 328.2 211 79.6
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.1e-87 326.2 225 76.0
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.7e-87 325.9 214 78.5
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 8.0e-87 324.3 214 78.0
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.4e-86 323.6 214 78.0
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.8e-86 323.2 231 72.7
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 5.2e-86 321.6 205 79.0
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.2e-85 320.5 252 69.8
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.0e-85 319.7 225 73.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.8e-85 317.4 213 74.2
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.7e-84 316.6 178 86.5
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 9.1e-83 310.8 213 72.8
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.6e-82 310.1 226 69.0
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 6.1e-79 298.1 198 77.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.4e-75 287.0 212 65.1
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 4.3e-72 275.4 211 63.5
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 8.0e-71 271.2 206 70.9
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.2e-66 257.3 179 68.7
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 3.6e-63 245.7 179 63.1
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 7.8e-58 228.0 175 61.1
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 3.4e-53 212.6 135 76.3
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 5.6e-48 195.3 114 83.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.3e-48 194.9 149 65.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.4e-43 180.6 191 48.7
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.1e-38 164.5 189 46.6
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.3e-25 120.9 78 78.2
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.5e-24 117.5 171 37.4
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.7e-20 104.0 75 74.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.0e-17 93.2 67 70.1
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.7e-12 77.4 161 32.9
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.7e-10 70.1 52 63.5
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 2.2e-07 60.5 208 26.4
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 2.8e-07 60.1 182 28.0
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.8e-07 60.1 219 26.9
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.8e-07 60.1 219 26.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 8.2e-07 58.5 208 26.4
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.4e-06 57.8 229 23.1
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 9.0e-06 55.1 224 23.7
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 9.0e-06 55.1 239 21.3


User provided reference genes

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