Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.7e-113 412.1 226 100.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 8.7e-64 247.7 226 68.6
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.9e-63 246.5 226 68.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.5e-63 246.1 226 66.8
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.5e-63 246.1 226 67.3
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 3.3e-63 245.7 225 67.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.6e-62 243.4 224 67.9
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.8e-62 242.7 226 67.3
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.1e-62 241.1 226 66.4
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.0e-61 237.7 231 60.6
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.5e-60 236.9 230 62.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-60 236.9 230 62.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-60 236.5 226 65.5
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.6e-60 236.1 226 64.6
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.4e-60 235.7 226 64.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.5e-60 235.3 232 61.2
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.0e-59 234.2 226 64.2
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-59 233.8 226 63.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.2e-59 233.0 226 64.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.2e-59 233.0 226 64.6
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.8e-59 232.3 226 65.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.9e-59 231.9 231 62.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 4.9e-59 231.9 230 62.6
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 6.5e-59 231.5 228 62.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-58 230.7 231 62.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.9e-58 229.9 226 62.8
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-58 229.2 230 61.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 7.1e-58 228.0 226 63.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 7.1e-58 228.0 226 61.9
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 9.3e-58 227.6 226 65.9
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.2e-57 227.3 226 63.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.6e-57 226.9 226 62.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.1e-57 226.5 231 60.6
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.5e-57 225.7 226 61.9
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.5e-57 225.7 226 61.9
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.9e-57 224.6 226 61.5
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.0e-56 224.2 226 65.9
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.0e-56 224.2 230 62.6
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.3e-56 223.8 229 65.1
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.3e-56 223.0 226 61.9
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.0e-56 222.6 226 61.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.1e-56 221.9 226 62.4
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 6.7e-56 221.5 226 60.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.1e-55 220.7 226 61.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.5e-55 220.3 226 60.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.5e-55 220.3 226 60.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.5e-55 220.3 260 57.7
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.9e-55 219.9 227 62.1
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.3e-55 219.2 227 61.2
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 3.3e-55 219.2 224 64.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 5.7e-55 218.4 226 63.3
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 7.4e-55 218.0 237 60.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 9.6e-55 217.6 226 61.5
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.3e-54 217.2 226 58.8
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.3e-54 217.2 226 61.9
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.6e-54 216.9 127 89.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.7e-54 215.7 247 57.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 4.8e-54 215.3 229 60.3
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.8e-54 215.3 126 86.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 6.3e-54 214.9 126 88.1
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 6.3e-54 214.9 226 60.6
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 8.2e-54 214.5 226 60.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 8.2e-54 214.5 236 60.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 8.2e-54 214.5 236 60.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.1e-53 214.2 226 61.1
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.4e-53 213.8 226 58.8
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.1e-53 212.2 213 64.8
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 6.9e-53 211.5 126 87.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.2e-52 210.7 226 59.7
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.2e-52 210.7 226 58.8
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.0e-52 209.9 128 84.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 4.5e-52 208.8 226 59.3
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.5e-52 208.8 222 61.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 5.8e-52 208.4 127 85.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 5.8e-52 208.4 236 58.1
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 7.6e-52 208.0 252 56.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-51 207.2 227 59.9
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.7e-51 206.8 229 57.2
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 2.2e-51 206.5 214 63.6
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.8e-51 205.7 229 59.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.5e-51 204.9 230 57.4
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.4e-50 203.8 226 58.8
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-50 203.4 233 56.2
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.5e-50 203.0 122 85.2
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.5e-50 201.8 225 59.1
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.6e-49 200.3 226 58.8
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.6e-49 200.3 236 55.5
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.5e-49 199.1 223 57.4
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.6e-49 198.7 226 58.0
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 4.6e-49 198.7 223 57.8
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.3e-48 197.2 128 79.7
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.8e-48 196.8 226 56.6
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.8e-48 196.8 214 58.4
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.5e-47 193.7 224 57.1
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.3e-47 192.2 162 66.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 4.3e-47 192.2 134 79.9
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.4e-47 191.4 226 54.9
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.3e-46 190.7 226 54.9
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-46 189.9 127 77.2
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.8e-45 186.8 197 60.9
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.4e-45 186.4 229 54.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.4e-45 186.4 226 54.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.4e-45 186.4 112 87.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 6.9e-45 184.9 226 54.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.9e-45 184.9 232 50.9
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.9e-45 184.9 127 74.8
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-44 184.1 226 54.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 3.4e-44 182.6 105 89.5
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 4.5e-44 182.2 224 52.7
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 5.9e-44 181.8 224 52.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 7.7e-44 181.4 233 51.5
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.0e-43 181.0 206 59.7
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.7e-43 180.3 224 54.0
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.2e-43 179.9 106 88.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 5.0e-43 178.7 224 52.7
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.5e-43 178.3 224 50.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.0e-39 166.8 228 49.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.3e-39 165.6 125 71.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.8e-37 160.2 95 83.2
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.0e-36 156.8 219 49.3
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 4.5e-36 155.6 126 62.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 5.9e-36 155.2 183 59.6
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 7.7e-36 154.8 128 67.2
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.9e-35 152.9 187 57.8
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-35 152.5 228 45.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.0e-35 152.1 230 47.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.5e-35 151.8 109 72.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 8.5e-35 151.4 101 80.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.1e-34 151.0 109 75.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.2e-34 149.4 210 48.6
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.2e-34 149.4 210 48.6
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.1e-33 146.7 129 62.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-33 146.0 129 64.3
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.0e-32 144.4 195 55.4
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.9e-32 142.5 205 50.2
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.7e-31 138.7 146 54.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.8e-30 136.3 226 45.6
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.4e-29 133.3 84 83.3
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 7.0e-29 131.7 228 40.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 2.0e-28 130.2 103 62.1
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-28 129.8 226 46.9
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.3e-27 127.5 183 49.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 8.5e-27 124.8 128 57.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.8e-24 117.1 238 40.3
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-23 114.0 151 54.3
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.2e-22 110.2 81 72.8
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-20 104.0 79 68.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 5.9e-20 102.1 151 49.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.5e-19 98.6 153 51.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.7e-15 85.5 48 83.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.2e-14 83.6 181 38.1
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 4.1e-13 79.3 115 41.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.6e-12 77.4 65 60.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.7e-11 73.9 115 39.1
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 7.2e-10 68.6 148 42.6
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.1e-09 67.0 102 43.1
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.1e-09 67.0 41 73.2
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 4.7e-09 65.9 122 45.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.8e-08 63.9 37 78.4
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 6.8e-08 62.0 121 46.3
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-06 57.8 46 63.0
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 4.9e-06 55.8 121 43.0


User provided reference genes

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