Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 3.1e-306 1054.3 516 100.0
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.7e-244 846.7 516 81.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.1e-242 841.6 522 80.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 5.3e-242 840.9 508 81.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.3e-242 840.9 508 82.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.9e-242 840.5 509 81.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.1e-237 824.3 511 80.4
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 6.7e-237 823.9 519 79.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 4.8e-235 817.8 522 79.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 8.2e-235 817.0 510 79.2
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.4e-234 816.2 518 78.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.2e-233 813.1 511 79.3
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.9e-233 810.8 504 79.6
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.9e-232 808.5 511 78.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 8.5e-232 807.0 511 79.1
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-230 803.1 507 77.3
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.9e-229 798.1 506 78.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 3.9e-229 798.1 503 78.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 8.8e-229 797.0 516 79.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.8e-227 791.2 511 77.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 9.1e-226 786.9 506 78.5
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.2e-225 786.6 511 77.3
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.6e-225 786.2 511 76.3
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.0e-225 785.8 509 77.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.9e-225 784.3 509 77.4
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.9e-225 784.3 509 77.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.7e-225 783.9 509 77.6
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.0e-224 783.5 504 78.0
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-224 783.5 509 77.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.3e-224 783.1 508 76.2
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.7e-224 782.7 512 75.8
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 2.7e-222 775.4 506 77.7
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.7e-222 775.4 510 77.1
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.6e-222 775.0 502 76.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 6.1e-222 774.2 504 76.4
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 8.8e-221 770.4 508 75.6
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.5e-220 769.6 514 75.7
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.4e-220 768.1 506 77.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 7.5e-220 767.3 503 76.9
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.7e-219 766.1 508 76.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.7e-219 765.0 514 75.3
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.7e-219 765.0 506 74.5
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 4.8e-219 764.6 531 73.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 9.1e-218 760.4 505 75.4
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.7e-217 758.8 511 75.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.2e-216 755.7 511 74.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.2e-215 751.9 499 75.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 7.2e-215 750.7 499 76.4
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.1e-214 749.2 503 74.4
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.1e-214 747.7 480 76.5
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.0e-213 746.9 508 73.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.3e-213 745.7 499 75.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.3e-213 745.7 506 75.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 5.2e-213 744.6 507 73.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 6.8e-213 744.2 509 75.8
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.2e-212 743.4 502 72.9
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.5e-212 743.0 524 72.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 3.4e-212 741.9 500 75.4
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 7.5e-212 740.7 502 73.9
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 7.5e-212 740.7 507 75.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 9.8e-212 740.3 497 75.5
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.8e-211 738.8 585 67.7
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 4.8e-211 738.0 506 73.1
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.1e-210 736.9 485 76.7
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.4e-210 736.5 508 73.4
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.4e-210 736.5 497 75.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.6e-208 727.2 509 73.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.1e-207 726.9 485 75.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.5e-207 726.5 506 72.5
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 7.2e-207 724.2 506 72.1
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-206 723.4 524 72.3
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 5.2e-205 718.0 500 72.2
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.2e-204 716.8 500 72.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.4e-204 715.3 508 71.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.4e-204 715.3 498 73.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.1e-202 710.3 545 67.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.7e-201 705.7 457 77.7
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.8e-201 704.1 455 78.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.0e-200 703.7 499 72.3
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 5.0e-200 701.4 438 79.9
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.3e-199 698.7 523 68.3
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.6e-198 696.4 502 70.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.3e-197 692.6 496 70.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.3e-197 692.6 496 70.2
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.3e-197 692.6 512 69.1
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 5.4e-194 681.4 517 66.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 6.2e-190 667.9 509 70.1
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.0e-188 662.9 496 67.5
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.6e-188 662.5 508 66.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.0e-186 654.4 420 78.3
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.0e-184 649.0 513 65.5
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.7e-182 641.7 503 67.4
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.4e-181 640.2 461 71.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 8.9e-181 637.5 459 70.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.5e-180 636.7 459 70.4
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.6e-180 636.0 368 85.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.4e-180 635.6 521 64.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.0e-176 624.0 513 61.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.1e-175 620.5 368 83.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.1e-174 616.3 508 63.8
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 6.2e-174 614.8 530 61.7
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 5.2e-173 611.7 440 70.5
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 9.9e-172 607.4 506 60.3
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.2e-169 600.5 392 77.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-167 594.0 483 63.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.6e-166 589.0 477 64.2
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.1e-165 587.4 367 79.3
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-165 586.3 483 62.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.3e-160 569.7 504 57.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.6e-153 547.0 478 59.8
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.0e-152 544.3 380 73.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.3e-152 543.9 330 81.8
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.7e-152 541.6 473 60.3
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.7e-152 541.6 489 57.5
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.6e-150 537.0 454 62.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.8e-150 536.2 514 54.7
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.2e-147 526.6 357 75.4
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.0e-144 517.7 426 66.2
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.6e-142 510.4 480 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.9e-135 486.9 506 51.8
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.3e-128 463.4 283 80.2
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 4.3e-127 459.1 360 67.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.4e-125 453.4 340 70.3
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 7.7e-116 421.8 411 52.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-113 414.5 473 52.0
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.3e-104 383.6 294 67.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.8e-102 375.9 366 58.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-97 361.3 316 62.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.5e-92 343.2 320 60.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.9e-82 310.8 231 68.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-72 277.3 209 64.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.2e-72 276.2 227 63.4
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 6.4e-70 269.2 396 39.1
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-68 262.3 159 78.6
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 3.1e-64 250.4 305 44.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.6e-58 229.6 135 81.5
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.8e-57 227.3 138 81.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.1e-56 223.8 217 58.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 6.4e-54 216.1 330 41.5
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 8.4e-54 215.7 135 76.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.6e-39 167.5 194 51.0
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 9.9e-39 165.6 162 57.4
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.4e-38 162.9 112 71.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.6e-34 149.8 126 57.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 6.7e-27 126.3 329 29.2
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 4.8e-25 120.2 68 80.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.5e-22 109.8 120 55.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.2e-20 105.5 444 25.7
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 6.3e-17 93.2 65 72.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.1e-16 90.9 83 57.8
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.1e-12 78.2 60 65.0
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.6e-12 77.4 45 77.8
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 5.7e-10 70.1 38 81.6
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.8e-09 67.8 53 54.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-07 62.4 33 81.8


User provided reference genes

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