Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011323 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 4.6e-42 174.1 85 100.0
CSS0035586 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 9.3e-35 149.8 79 91.1
CSS0042962 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 9.3e-35 149.8 79 91.1
Actinidia39593 Actinidia chinensis HOM05D000321 ORTHO05D000204 1.5e-29 132.5 75 84.0
CSS0025177 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 1.5e-29 132.5 75 80.0
Actinidia26537 Actinidia chinensis HOM05D000321 ORTHO05D000204 9.9e-29 129.8 75 80.0
Rhsim02G0159600 Rhododendron simsii HOM05D000321 ORTHO05D000204 1.7e-28 129.0 75 80.0
Dinv32207 Davidia involucrata HOM05D000321 ORTHO05D000204 2.2e-28 128.6 75 80.0
Dinv21505 Davidia involucrata HOM05D000321 ORTHO05D000204 3.8e-28 127.9 75 78.7
Dinv21509 Davidia involucrata HOM05D000321 ORTHO05D000204 2.4e-27 125.2 75 78.7
Lj1A1168T69 Lonicera japonica HOM05D000321 ORTHO05D000204 3.2e-27 124.8 75 76.0
QL05p054856 Quercus lobata HOM05D000321 ORTHO05D000204 5.5e-27 124.0 75 80.0
Dinv21514 Davidia involucrata HOM05D000321 ORTHO05D000204 9.3e-27 123.2 75 74.7
Sed0017151 Sechium edule HOM05D000321 ORTHO05D000204 2.1e-26 122.1 79 72.2
ClCG01G024950 Citrullus lanatus HOM05D000321 ORTHO05D000204 2.7e-26 121.7 75 76.0
CsaV3_6G052110 Cucumis sativus L. HOM05D000321 ORTHO05D000204 3.5e-26 121.3 75 76.0
Manes.17G074400 Manihot esculenta HOM05D000321 ORTHO05D000204 3.5e-26 121.3 75 74.7
Sed0011105 Sechium edule HOM05D000321 ORTHO05D000204 6.0e-26 120.6 79 69.6
Lj2A323T72 Lonicera japonica HOM05D000321 ORTHO05D000204 7.9e-26 120.2 75 73.3
Migut.M01866 Erythranthe guttata HOM05D000321 ORTHO05D000204 1.8e-25 119.0 79 68.4
MELO3C007100.2 Cucumis melo HOM05D000321 ORTHO05D000204 3.0e-25 118.2 75 72.0
Oeu015208.1 Olea europaea HOM05D000321 ORTHO05D000204 3.0e-25 118.2 75 73.3
vmacro10968 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 3.9e-25 117.9 75 73.3
Cc09_g08710 Coffea canephora HOM05D000321 ORTHO05D000204 6.7e-25 117.1 75 77.3
DCAR_003880 Daucus carota HOM05D000321 ORTHO05D000204 8.7e-25 116.7 75 72.0
GSVIVG01021562001 Vitis vinifera HOM05D000321 ORTHO05D000204 1.1e-24 116.3 75 73.3
Eucgr.D00261 Eucalyptus grandis HOM05D000321 ORTHO05D000204 2.5e-24 115.2 75 73.3
TAR627G0929 Trochodendron aralioides HOM05D000321 ORTHO05D000204 2.5e-24 115.2 75 70.7
Cfa000887 Carpinus fangiana HOM05D000321 ORTHO05D000204 7.4e-24 113.6 75 72.0
Potri.001G358300 Populus trichocarpa HOM05D000321 ORTHO05D000204 7.4e-24 113.6 75 70.7
EL10Ac8g19554 Beta vulgaris HOM05D000321 ORTHO05D000204 9.6e-24 113.2 75 68.0
Eucgr.D00260 Eucalyptus grandis HOM05D000321 ORTHO05D000204 1.3e-23 112.8 68 77.9
Hma1.2p1_0586F.1_g183800 Hydrangea macrophylla HOM05D000321 ORTHO05D000204 1.3e-23 112.8 75 70.7
TAR626G0086 Trochodendron aralioides HOM05D000321 ORTHO05D000204 1.6e-23 112.5 75 70.7
MSTRG.16272 Avicennia marina HOM05D000321 ORTHO05D000204 2.8e-23 111.7 75 69.3
TWI09G0268 Tripterygium wilfordii HOM05D000321 ORTHO05D000204 3.7e-23 111.3 79 65.8
Peaxi162Scf00045g02324 Petunia axillaris HOM05D000321 ORTHO05D000204 4.8e-23 110.9 79 65.8
SGA_v2.0_scaffold223G42830 Striga asiatica HOM05D000321 ORTHO05D000204 4.8e-23 110.9 79 63.3
CiPaw.09G119100 Carya illinoinensis HOM05D000321 ORTHO05D000204 6.2e-23 110.5 75 68.0
DCAR_007867 Daucus carota HOM05D000321 ORTHO05D000204 6.2e-23 110.5 77 68.8
Ciclev10014407m.g Citrus clementina HOM05D000321 ORTHO05D000204 8.2e-23 110.2 75 66.7
PGR083G0400 Punica granatum HOM05D000321 ORTHO05D000204 8.2e-23 110.2 68 76.5
Hund21553 Selenicereus undatus HOM05D000321 ORTHO05D000204 8.2e-23 110.2 79 65.8
Ah.09g232460 Amaranthus hybridus HOM05D000321 ORTHO05D000204 1.1e-22 109.8 75 70.7
Cpa.g.sc17.62 Carica papaya HOM05D000321 ORTHO05D000204 1.4e-22 109.4 75 68.0
Haze_05698 Corylus avellana HOM05D000321 ORTHO05D000204 1.8e-22 109.0 68 76.5
DCAR_027883 Daucus carota HOM05D000321 ORTHO05D000204 1.8e-22 109.0 75 66.7
Lsat_1_v5_gn_7_29160 Lactuca sativa HOM05D000321 ORTHO05D000204 1.8e-22 109.0 75 69.3
MBI02_g15132_MAGBIO Magnolia biondii HOM05D000321 ORTHO05D000204 1.8e-22 109.0 75 66.7
Hund17713 Selenicereus undatus HOM05D000321 ORTHO05D000204 1.8e-22 109.0 75 68.0
Sc05g0005950 Simmondsia chinensis HOM05D000321 ORTHO05D000204 1.8e-22 109.0 75 66.7
MD05G1278500 Malus domestica HOM05D000321 ORTHO05D000204 2.4e-22 108.6 75 68.0
AUR62002675 Chenopodium quinoa HOM05D000321 ORTHO05D000204 3.1e-22 108.2 75 65.3
Sabra16G0236100 Salix brachista HOM05D000321 ORTHO05D000204 3.1e-22 108.2 75 68.0
MSTRG.7519 Avicennia marina HOM05D000321 ORTHO05D000204 4.0e-22 107.8 75 68.0
MD10G1257300 Malus domestica HOM05D000321 ORTHO05D000204 4.0e-22 107.8 75 66.7
QL05p054808 Quercus lobata HOM05D000321 ORTHO05D000204 5.3e-22 107.5 77 70.1
Ah.05g177180 Amaranthus hybridus HOM05D000321 ORTHO05D000204 9.0e-22 106.7 80 61.2
FvH4_3g04980 Fragaria vesca HOM05D000321 ORTHO05D000204 1.2e-21 106.3 79 59.5
FAN11G3273 Fragaria x ananassa HOM05D000321 ORTHO05D000204 1.2e-21 106.3 79 59.5
Nitab4.5_0012857g0010 Nicotiana tabacum HOM05D000321 ORTHO05D000204 1.2e-21 106.3 79 62.0
Haze_05697 Corylus avellana HOM05D000321 ORTHO05D000204 1.5e-21 105.9 79 69.6
Prupe.4G086300 Prunus persica HOM05D000321 ORTHO05D000204 1.5e-21 105.9 75 65.3
FAN21G1566 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.0e-21 105.5 79 59.5
Nitab4.5_0000315g0120 Nicotiana tabacum HOM05D000321 ORTHO05D000204 2.0e-21 105.5 79 63.3
FAN25G2542 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.6e-21 105.1 79 58.2
Cfa000888 Carpinus fangiana HOM05D000321 ORTHO05D000204 4.5e-21 104.4 75 70.7
ECA236G1212 Erigeron canadensis HOM05D000321 ORTHO05D000204 4.5e-21 104.4 75 62.7
CAN.G3781.1 Capsicum annuum HOM05D000321 ORTHO05D000204 7.6e-21 103.6 79 60.8
FAN16G2070 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.6e-21 103.6 79 58.2
THA.LOC104814315 Tarenaya hassleriana HOM05D000321 ORTHO05D000204 7.6e-21 103.6 80 58.8
Psat1g191440 Pisum sativum HOM05D000321 ORTHO05D000204 1.0e-20 103.2 75 62.7
SalBow8G5135 Salvia bowleyana HOM05D000321 ORTHO05D000204 1.0e-20 103.2 75 65.3
Atru.chr10.1050 Acer truncatum HOM05D000321 ORTHO05D000204 1.3e-20 102.8 75 64.0
RcHm_v2.0_Chr5g0015001 Rosa chinensis HOM05D000321 ORTHO05D000204 1.7e-20 102.4 79 62.0
Sabra16G0235900 Salix brachista HOM05D000321 ORTHO05D000204 1.7e-20 102.4 75 65.3
PGSC0003DMG400002290 Solanum tuberosum HOM05D000321 ORTHO05D000204 1.7e-20 102.4 75 62.7
HanXRQChr15g0481591 Helianthus annuus HOM05D000321 ORTHO05D000204 2.2e-20 102.1 75 62.7
SalBow8G3537 Salvia bowleyana HOM05D000321 ORTHO05D000204 2.2e-20 102.1 68 66.2
Sopen08g008540 Solanum pennellii HOM05D000321 ORTHO05D000204 2.2e-20 102.1 75 64.0
MBI18_g10591_MAGBIO Magnolia biondii HOM05D000321 ORTHO05D000204 3.8e-20 101.3 75 62.7
unitig_26.g9769 Utricularia gibba HOM05D000321 ORTHO05D000204 3.8e-20 101.3 75 64.0
COL.COLO4_31003 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.9e-20 100.9 75 62.7
Nn4g26640 Nelumbo nucifera HOM05D000321 ORTHO05D000204 1.1e-19 99.8 75 61.3
Solyc08g023440.3 Solanum lycopersicum HOM05D000321 ORTHO05D000204 1.1e-19 99.8 75 62.7
CAN.G36.22 Capsicum annuum HOM05D000321 ORTHO05D000204 1.4e-19 99.4 79 58.2
CARHR029750 Cardamine hirsuta HOM05D000321 ORTHO05D000204 1.4e-19 99.4 80 60.0
TPR.G26231 Trifolium pratense HOM05D000321 ORTHO05D000204 1.4e-19 99.4 79 58.2
Lalb_Chr18g0055191 Lupinus albus HOM05D000321 ORTHO05D000204 1.9e-19 99.0 75 61.3
Thecc.06G143600 Theobroma cacao HOM05D000321 ORTHO05D000204 1.9e-19 99.0 75 61.3
AT1G30360 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 3.2e-19 98.2 80 58.8
Glyma.13G220900 Glycine max HOM05D000321 ORTHO05D000204 4.2e-19 97.8 75 61.3
AUR62030130 Chenopodium quinoa HOM05D000321 ORTHO05D000204 5.5e-19 97.4 69 65.2
Ca_00515_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 5.5e-19 97.4 75 61.3
Carub.0001s2856 Capsella rubella HOM05D000321 ORTHO05D000204 1.2e-18 96.3 80 58.8
Glyma.15G091600 Glycine max HOM05D000321 ORTHO05D000204 1.2e-18 96.3 79 59.5
Duzib235G0777 Durio zibethinus HOM05D000321 ORTHO05D000204 1.6e-18 95.9 75 61.3
Os07g0150100 Oryza sativa ssp. japonica HOM05D000321 ORTHO05D000204 1.6e-18 95.9 79 53.2
Gohir.A06G141300 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.7e-18 95.1 75 61.3
Gohir.D06G144700 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.7e-18 95.1 75 61.3
AL1G44290 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 3.5e-18 94.7 80 57.5
BcaC05g27069 Brassica carinata HOM05D000321 ORTHO05D000204 3.5e-18 94.7 79 59.5
A09p36100 Brassica napus HOM05D000321 ORTHO05D000204 3.5e-18 94.7 79 59.5
C05p29310 Brassica napus HOM05D000321 ORTHO05D000204 3.5e-18 94.7 79 59.5
BolC5t31663H Brassica oleracea HOM05D000321 ORTHO05D000204 3.5e-18 94.7 79 59.5
BraA09t39134Z Brassica rapa HOM05D000321 ORTHO05D000204 3.5e-18 94.7 79 59.5
Thhalv10006933m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 3.5e-18 94.7 80 60.0
Gorai.009G152500 Gossypium raimondii HOM05D000321 ORTHO05D000204 4.6e-18 94.4 75 60.0
Gorai.010G168400 Gossypium raimondii HOM05D000321 ORTHO05D000204 4.6e-18 94.4 75 61.3
BcaB07g32645 Brassica carinata HOM05D000321 ORTHO05D000204 6.0e-18 94.0 79 58.2
Gohir.A05G146000 Gossypium hirsutum HOM05D000321 ORTHO05D000204 6.0e-18 94.0 75 60.0
Gohir.D05G148300 Gossypium hirsutum HOM05D000321 ORTHO05D000204 6.0e-18 94.0 75 60.0
HPP92_001890 Vanilla planifolia HOM05D000321 ORTHO05D000204 6.0e-18 94.0 75 57.3
VMungo0540G0315 Vigna mungo HOM05D000321 ORTHO05D000204 6.0e-18 94.0 75 60.0
CDE05G0206 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 7.9e-18 93.6 79 55.7
CANSAT35G0620 Cannabis sativa HOM05D000321 ORTHO05D000204 1.0e-17 93.2 75 61.3
ATR1098G123 Amborella trichopoda HOM05D000321 ORTHO05D000204 1.3e-17 92.8 76 56.6
PSO675G8841 Papaver somniferum HOM05D000321 ORTHO05D000204 1.8e-17 92.4 80 56.2
Psat6g113280 Pisum sativum HOM05D000321 ORTHO05D000204 1.8e-17 92.4 75 58.7
arahy.Tifrunner.gnm1.ann1.1QW2C7 Arachis hypogaea HOM05D000321 ORTHO05D000204 2.3e-17 92.0 75 54.7
arahy.Tifrunner.gnm1.ann1.EC4CEA Arachis hypogaea HOM05D000321 ORTHO05D000204 2.3e-17 92.0 75 54.7
PSO541G3770 Papaver somniferum HOM05D000321 ORTHO05D000204 2.3e-17 92.0 80 56.2
Sp1g26200 Schrenkiella parvula HOM05D000321 ORTHO05D000204 2.3e-17 92.0 81 58.0
BcaB03g12210 Brassica carinata HOM05D000321 ORTHO05D000204 3.0e-17 91.7 80 58.8
Lj6g0023540 Lotus japonicus HOM05D000321 ORTHO05D000204 3.0e-17 91.7 75 57.3
Phvul.006G167700 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 3.0e-17 91.7 75 58.7
Zm00001eb117590 Zea mays HOM05D000321 ORTHO05D000204 3.9e-17 91.3 79 53.2
Psat1g108800 Pisum sativum HOM05D000321 ORTHO05D000204 6.7e-17 90.5 75 58.7
Aa31LG6G5410 Aethionema arabicum HOM05D000321 ORTHO05D000204 8.7e-17 90.1 79 57.0
BcaC01g00187 Brassica carinata HOM05D000321 ORTHO05D000204 8.7e-17 90.1 81 56.8
C03p76710 Brassica napus HOM05D000321 ORTHO05D000204 8.7e-17 90.1 81 56.8
BolC3t19926H Brassica oleracea HOM05D000321 ORTHO05D000204 8.7e-17 90.1 81 56.8
A08p24500 Brassica napus HOM05D000321 ORTHO05D000204 1.1e-16 89.7 81 56.8
BraA08t34406Z Brassica rapa HOM05D000321 ORTHO05D000204 1.1e-16 89.7 81 56.8
Medtr2g018780 Medicago truncatula HOM05D000321 ORTHO05D000204 3.3e-16 88.2 75 58.7
AUR62002674 Chenopodium quinoa HOM05D000321 ORTHO05D000204 5.7e-16 87.4 61 67.2
Pp3c9_3190 Physcomitrium patens HOM05D000321 ORTHO05D000204 4.8e-15 84.3 80 51.2
SEGI_18685 Sequoiadendron giganteum HOM05D000321 ORTHO05D000204 8.2e-15 83.6 80 48.8
Pp3c7_9820 Physcomitrium patens HOM05D000321 ORTHO05D000204 7.7e-13 77.0 80 42.5
Mapoly0155s0022 Marchantia polymorpha HOM05D000321 ORTHO05D000204 2.9e-12 75.1 80 46.2
CANSAT35G0687 Cannabis sativa HOM05D000321 ORTHO05D000204 1.1e-11 73.2 76 52.6
Pp3c1_13840 Physcomitrium patens HOM05D000321 ORTHO05D000204 1.1e-11 73.2 75 45.3
AUR62030129 Chenopodium quinoa HOM05D000321 ORTHO05D000204 4.2e-11 71.2 45 71.1
Pp3c12_18380 Physcomitrium patens HOM05D000321 ORTHO05D000204 3.6e-10 68.2 80 41.2
Pp3c16_3180 Physcomitrium patens HOM05D000321 ORTHO05D000204 7.9e-10 67.0 74 40.5
Pp3c11_15540 Physcomitrium patens HOM05D000321 ORTHO05D000204 1.0e-09 66.6 80 38.8
arahy.Tifrunner.gnm1.ann1.L5KNP4 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.4e-09 66.2 60 53.3
CBR_g39011 Chara braunii HOM05D000321 ORTHO05D000204 1.4e-09 66.2 75 44.0
Pp3c3_38100 Physcomitrium patens HOM05D000321 ORTHO05D000204 1.8e-09 65.9 79 35.4
Pp3c6_25510 Physcomitrium patens HOM05D000321 ORTHO05D000204 3.0e-09 65.1 75 38.7
AagrBONN_evm.TU.Sc2ySwM_117.1843 Anthoceros agrestis HOM05D000321 ORTHO05D000204 5.1e-09 64.3 67 44.8
QL05p054753 Quercus lobata HOM05D000321 ORTHO05D000204 4.3e-08 61.2 42 66.7
AUR62030128 Chenopodium quinoa HOM05D000321 ORTHO05D000204 8.2e-07 57.0 36 72.2
HanXRQChr13g0391121 Helianthus annuus HOM05D000321 ORTHO05D000204 2.4e-06 55.5 37 70.3
CAN.G1682.16 Capsicum annuum HOM05D000321 ORTHO05D000204 4.1e-06 54.7 66 36.4
Nitab4.5_0006180g0030 Nicotiana tabacum HOM05D000321 ORTHO05D000204 5.3e-06 54.3 61 41.0
Psat5g199720 Pisum sativum HOM05D000321 ORTHO05D000204 6.9e-06 53.9 66 37.9
arahy.Tifrunner.gnm1.ann1.9E6M3B Arachis hypogaea HOM05D000321 ORTHO05D000204 9.1e-06 53.5 44 56.8
A03p67800 Brassica napus HOM05D000321 ORTHO05D000204 9.1e-06 53.5 63 41.3
BraA01t02688Z Brassica rapa HOM05D000321 ORTHO05D000204 9.1e-06 53.5 63 41.3
QL12p022596 Quercus lobata HOM05D000321 ORTHO05D000204 9.1e-06 53.5 66 37.9
Sp2g02300 Schrenkiella parvula HOM05D000321 ORTHO05D000204 9.1e-06 53.5 65 38.5


User provided reference genes

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