Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011297 Camellia sinensis var. sinensis HOM05D002427 ORTHO05D023732 1.0e-30 136.0 62 100.0
Peaxi162Scf01286g00123 Petunia axillaris HOM05D002427 ORTHO05D002818 1.1e-08 62.8 29 96.6
arahy.Tifrunner.gnm1.ann1.7V0FWY Arachis hypogaea HOM05D002427 ORTHO05D023732 1.4e-08 62.4 35 80.0
arahy.Tifrunner.gnm1.ann1.GBNN5P Arachis hypogaea HOM05D002427 ORTHO05D023732 1.4e-08 62.4 35 80.0
Ciclev10025061m.g Citrus clementina HOM05D002427 ORTHO05D002818 5.4e-08 60.5 29 93.1
Cc07_g20240 Coffea canephora HOM05D002427 ORTHO05D002818 5.4e-08 60.5 31 83.9
Nitab4.5_0000147g0070 Nicotiana tabacum HOM05D002427 ORTHO05D002818 5.4e-08 60.5 29 93.1
Nitab4.5_0001663g0160 Nicotiana tabacum HOM05D002427 ORTHO05D002818 5.4e-08 60.5 29 93.1
arahy.Tifrunner.gnm1.ann1.92987I Arachis hypogaea HOM05D002427 ORTHO05D087754 7.1e-08 60.1 31 87.1
EL10Ac4g08949 Beta vulgaris HOM05D002427 ORTHO05D002818 7.1e-08 60.1 29 86.2
arahy.Tifrunner.gnm1.ann1.A2RU10 Arachis hypogaea HOM05D002427 ORTHO05D002818 1.6e-07 58.9 29 93.1
arahy.Tifrunner.gnm1.ann1.GNX9M7 Arachis hypogaea HOM05D002427 ORTHO05D002818 1.6e-07 58.9 29 93.1
Medtr3g097250 Medicago truncatula HOM05D002427 ORTHO05D002818 2.7e-07 58.2 29 89.7
Psat5g057800 Pisum sativum HOM05D002427 ORTHO05D002818 2.7e-07 58.2 29 89.7
TPR.G28700 Trifolium pratense HOM05D002427 ORTHO05D002818 2.7e-07 58.2 29 89.7
Ca_17016_v3 Cicer arietinum L. HOM05D002427 ORTHO05D002818 3.5e-07 57.8 29 86.2
Dinv05907 Davidia involucrata HOM05D002427 ORTHO05D002818 4.6e-07 57.4 29 89.7
ECA248G0559 Erigeron canadensis HOM05D002427 ORTHO05D002818 7.8e-07 56.6 29 86.2
HanXRQChr11g0343541 Helianthus annuus HOM05D002427 ORTHO05D002818 7.8e-07 56.6 29 86.2
Lj1g0013321 Lotus japonicus HOM05D002427 ORTHO05D002818 7.8e-07 56.6 29 86.2
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.0e-06 56.2 29 86.2
Lalb_Chr08g0237811 Lupinus albus HOM05D002427 ORTHO05D002818 1.0e-06 56.2 29 89.7
vmacro18681 Vaccinium macrocarpon HOM05D002427 ORTHO05D002818 1.0e-06 56.2 29 86.2
CAN.G676.46 Capsicum annuum HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 89.7
Eucgr.L00739 Eucalyptus grandis HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 89.7
Rhsim08G0000900 Rhododendron simsii HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 86.2
Solyc04g015450.3 Solanum lycopersicum HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 89.7
Sopen04g007500 Solanum pennellii HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 89.7
PGSC0003DMG400027268 Solanum tuberosum HOM05D002427 ORTHO05D002818 1.3e-06 55.8 29 89.7
Actinidia16534 Actinidia chinensis HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
Cpa.g.sc37.74 Carica papaya HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
CiPaw.03G254700 Carya illinoinensis HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
Glyma.04G206300 Glycine max HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
QL10p040252 Quercus lobata HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
QL10p040373 Quercus lobata HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
SEGI_07522 Sequoiadendron giganteum HOM05D002427 ORTHO05D002818 1.7e-06 55.5 30 83.3
TWI31G0626 Tripterygium wilfordii HOM05D002427 ORTHO05D002818 1.7e-06 55.5 29 86.2
DCAR_012727 Daucus carota HOM05D002427 ORTHO05D002818 2.3e-06 55.1 29 86.2
Cfa002224 Carpinus fangiana HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
Haze_25401 Corylus avellana HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
Glyma.06G159400 Glycine max HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
Manes.13G078601 Manihot esculenta HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
Mapoly0067s0096 Marchantia polymorpha HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 79.3
Potri.001G305300 Populus trichocarpa HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
RcHm_v2.0_Chr2g0098891 Rosa chinensis HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
unitig_37.g12358 Utricularia gibba HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
VMungo1309G0797 Vigna mungo HOM05D002427 ORTHO05D002818 3.0e-06 54.7 29 86.2
Lj4A817G44 Lonicera japonica HOM05D002427 ORTHO05D002818 3.9e-06 54.3 29 82.8
MBI03_g40054_MAGBIO Magnolia biondii HOM05D002427 ORTHO05D002818 3.9e-06 54.3 29 86.2
Sc09g0004380 Simmondsia chinensis HOM05D002427 ORTHO05D002818 3.9e-06 54.3 29 82.8
AL6G19380 Arabidopsis lyrata HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
AT5G08650 Arabidopsis thaliana HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 5.1e-06 53.9 29 82.8
BcaC03g13236 Brassica carinata HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
C02p03680 Brassica napus HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 5.1e-06 53.9 29 82.8
BolC2t06327H Brassica oleracea HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
BolC3t12980H Brassica oleracea HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
BraA02t04962Z Brassica rapa HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
Carub.0006s0764 Capsella rubella HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
Thhalv10012870m.g Eutrema salsugineum HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
Phvul.009G157100 Phaseolus vulgaris HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
Sp6g34210 Schrenkiella parvula HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
HPP92_024255 Vanilla planifolia HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
HPP92_024266 Vanilla planifolia HOM05D002427 ORTHO05D002818 5.1e-06 53.9 29 82.8
ATR0684G052 Amborella trichopoda HOM05D002427 ORTHO05D002818 6.6e-06 53.5 29 82.8
FvH4_1g11350 Fragaria vesca HOM05D002427 ORTHO05D002818 6.6e-06 53.5 29 82.8
FAN23G1260 Fragaria x ananassa HOM05D002427 ORTHO05D002818 6.6e-06 53.5 29 82.8
FAN28G1337 Fragaria x ananassa HOM05D002427 ORTHO05D002818 6.6e-06 53.5 29 82.8
SGA_v2.0_scaffold30G12357 Striga asiatica HOM05D002427 ORTHO05D002818 6.6e-06 53.5 29 82.8
CANSAT54G0435 Cannabis sativa HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 86.2
CARHR204330 Cardamine hirsuta HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8
AUR62004792 Chenopodium quinoa HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 79.3
AUR62039045 Chenopodium quinoa HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 79.3
COL.COLO4_07358 Corchorus olitorius HOM05D002427 ORTHO05D002818 8.6e-06 53.1 30 76.7
Duzib147G0870 Durio zibethinus HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8
MD02G1127200 Malus domestica HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8
Nn1g08924 Nelumbo nucifera HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8
Prupe.7G172400 Prunus persica HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8
Sabra16G0191600 Salix brachista HOM05D002427 ORTHO05D002818 8.6e-06 53.1 29 82.8


User provided reference genes

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