Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.4e-47 191.4 85 100.0
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.4e-47 191.4 85 100.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.1e-20 102.4 78 52.6
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.0e-15 85.9 78 47.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.0e-15 85.9 63 55.6
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 2.6e-15 85.5 80 47.5
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.6e-15 85.5 78 46.2
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 5.8e-15 84.3 67 50.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 7.6e-15 84.0 79 48.1
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 8.4e-14 80.5 75 44.0
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.1e-13 80.1 76 47.4
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.4e-13 79.7 79 49.4
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.2e-12 76.6 69 46.4
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.7e-12 75.5 80 42.5
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.7e-12 75.5 79 44.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.5e-12 75.1 80 42.5
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.7e-11 72.8 80 47.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.7e-11 72.8 80 41.2
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 2.3e-11 72.4 78 46.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 6.6e-11 70.9 63 47.6
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.9e-10 69.3 71 45.1
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.5e-10 68.9 75 44.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 7.3e-10 67.4 74 43.2
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.8e-09 65.5 60 45.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-08 63.5 64 48.4
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.1e-08 62.0 77 36.4
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.1e-08 62.0 60 45.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 5.3e-08 61.2 81 35.8
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.9e-08 60.8 75 40.0
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 9.0e-08 60.5 58 39.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 9.0e-08 60.5 58 39.7
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 9.0e-08 60.5 85 36.5
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.2e-07 60.1 78 38.5
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.5e-07 59.7 81 35.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.0e-07 59.3 59 39.0
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.0e-07 59.3 67 41.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.0e-07 59.3 81 38.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.6e-07 58.9 77 35.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.8e-07 57.8 59 39.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 9.9e-07 57.0 33 63.6
AUR62026659 Chenopodium quinoa HOM05D008124 ORTHO05D004072 9.9e-07 57.0 33 63.6
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.2e-06 55.8 84 35.7
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 4.9e-06 54.7 75 37.3
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 8.4e-06 53.9 65 44.6


User provided reference genes

Program Settings