Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-100 369.0 179 100.0
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.8e-92 340.5 185 90.3
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.1e-77 293.5 177 82.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.1e-76 289.3 177 81.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.3e-75 285.8 177 81.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.1e-72 276.9 177 77.4
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.1e-72 276.9 177 76.8
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.5e-71 271.6 175 76.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.3e-70 270.0 177 73.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.2e-70 269.2 177 72.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.2e-70 269.2 176 73.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 3.8e-70 268.5 176 74.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 6.4e-70 267.7 177 73.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 6.4e-70 267.7 175 74.3
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.4e-69 266.5 177 72.3
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.4e-69 266.5 177 72.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 2.4e-69 265.8 182 73.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 2.4e-69 265.8 177 72.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.2e-69 265.0 185 75.7
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 5.4e-69 264.6 177 73.4
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 7.1e-69 264.2 175 73.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.1e-69 264.2 175 73.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 9.3e-69 263.8 177 72.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.2e-68 263.5 177 72.3
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.1e-68 262.7 177 72.3
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 6.0e-68 261.2 177 71.2
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 6.0e-68 261.2 177 72.3
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 6.0e-68 261.2 175 73.7
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.0e-67 260.4 175 72.6
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.0e-67 258.8 177 71.8
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.9e-67 258.5 181 69.6
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-66 256.9 184 68.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-66 256.9 187 69.0
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.5e-66 256.5 177 71.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.9e-66 256.1 179 69.8
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 2.5e-66 255.8 173 74.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.3e-66 255.4 177 69.5
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 3.3e-66 255.4 175 74.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.6e-66 254.6 180 71.7
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 9.6e-66 253.8 175 72.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 9.6e-66 253.8 179 69.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 9.6e-66 253.8 181 68.5
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.3e-65 253.4 177 69.5
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.6e-65 253.1 175 70.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.6e-65 253.1 173 71.7
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.8e-65 252.3 176 69.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 8.1e-65 250.8 177 68.4
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.1e-64 250.4 175 72.6
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.4e-64 250.0 181 70.2
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.4e-64 250.0 181 70.2
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.1e-64 248.8 173 70.5
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 3.1e-64 248.8 177 67.2
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.0e-64 248.4 175 70.9
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.3e-64 248.1 175 71.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 9.0e-64 247.3 177 70.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 9.0e-64 247.3 177 68.9
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-63 246.9 177 68.9
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.8e-63 244.6 181 65.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.8e-63 244.6 178 66.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.6e-63 244.2 177 68.4
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.3e-62 243.4 176 70.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 2.2e-62 242.7 175 68.6
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.2e-62 242.7 177 67.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.8e-62 241.9 176 69.3
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.8e-62 241.9 177 68.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 6.5e-62 241.1 181 65.2
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.1e-61 240.4 177 70.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.4e-61 240.0 180 65.0
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.9e-61 239.6 175 69.7
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.9e-61 239.6 176 67.6
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.9e-61 239.6 175 67.4
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.5e-61 239.2 181 65.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.5e-61 238.0 177 67.2
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.5e-61 238.0 181 65.2
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 7.1e-61 237.7 174 70.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.3e-61 237.3 181 64.6
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 2.1e-60 236.1 175 65.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 3.5e-60 235.3 175 65.1
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.5e-60 235.3 175 65.1
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.6e-60 235.0 175 65.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 6.0e-60 234.6 181 65.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.0e-59 233.8 183 66.1
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-59 233.4 185 63.2
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.8e-59 233.0 171 64.3
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.3e-59 232.6 175 66.9
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.0e-59 232.3 175 66.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.9e-59 231.9 175 64.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.6e-57 226.5 173 61.8
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 6.2e-57 224.6 175 66.9
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.8e-56 223.0 181 61.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.5e-55 219.9 175 61.7
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-55 219.9 177 63.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.6e-55 217.6 181 61.3
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-54 217.2 187 62.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.0e-54 217.2 181 60.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.1e-52 209.5 176 60.2
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.7e-52 209.1 159 65.4
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.5e-52 208.8 132 79.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 5.1e-51 204.9 173 59.0
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.1e-50 203.8 175 59.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.1e-50 203.8 175 57.7
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.5e-50 202.6 137 72.3
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.5e-50 202.6 180 57.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 5.7e-50 201.4 175 59.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 7.4e-50 201.1 175 58.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 7.4e-50 201.1 175 58.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 8.2e-49 197.6 173 61.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.0e-47 193.0 175 57.7
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 2.0e-47 193.0 178 52.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.3e-46 190.3 178 54.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.2e-45 185.7 133 67.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.7e-44 182.6 133 67.7
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-42 177.2 175 54.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 7.4e-42 174.5 134 64.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.8e-41 171.8 185 51.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.4e-40 170.2 175 53.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.8e-40 169.9 184 52.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.8e-40 169.9 134 64.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.9e-38 162.5 175 50.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.0e-35 152.5 175 50.3
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.4e-32 143.7 116 61.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 4.1e-32 142.1 166 47.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 7.0e-32 141.4 104 59.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.6e-31 139.4 114 57.0
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 5.9e-31 138.3 178 48.3
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.3e-30 137.1 146 53.4
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.5e-30 134.4 75 82.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.8e-25 118.6 75 74.7
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.9e-22 109.4 56 89.3
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.5e-21 106.3 65 69.2
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-20 103.2 55 85.5
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 6.8e-11 71.6 39 84.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 3.4e-10 69.3 39 82.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.3e-09 67.4 47 61.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.4e-08 63.9 37 78.4
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 2.4e-08 63.2 51 54.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-06 57.4 31 83.9


User provided reference genes

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