Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.6e-162 577.8 333 100.0
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 8.1e-154 548.9 333 94.0
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.9e-95 354.4 327 63.6
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 4.1e-89 334.0 284 71.1
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 8.9e-84 316.2 345 57.1
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 6.0e-72 276.9 287 62.4
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 2.6e-67 261.5 342 51.5
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 3.0e-63 248.1 339 47.5
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 7.3e-62 243.4 331 49.2
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 9.5e-62 243.0 327 47.1
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 2.0e-59 235.3 329 49.2
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.3e-58 232.6 333 49.5
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 7.1e-57 226.9 265 46.8
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 3.9e-55 221.1 334 48.5
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.3e-53 216.1 334 49.1
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 2.0e-51 208.8 321 44.2
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 6.4e-50 203.8 316 43.4
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 5.4e-49 200.7 276 47.1
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 1.2e-48 199.5 315 52.1
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 2.1e-48 198.7 318 52.2
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 1.3e-47 196.1 328 43.0
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 3.0e-47 194.9 314 51.6
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 3.9e-47 194.5 334 47.0
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 5.6e-46 190.7 311 51.4
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 1.6e-45 189.1 326 49.1
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 2.1e-45 188.7 325 49.8
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 6.2e-45 187.2 325 49.8
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 1.4e-44 186.0 330 41.5
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.4e-44 185.3 335 41.8
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 2.4e-44 185.3 326 49.1
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 5.3e-44 184.1 326 49.1
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 6.9e-44 183.7 277 43.7
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 9.0e-44 183.3 332 48.8
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 4.5e-43 181.0 320 48.4
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 8.4e-42 176.8 304 50.7
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 2.4e-41 175.3 157 56.7
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 2.4e-41 175.3 322 49.1
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 3.2e-41 174.9 312 49.4
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 7.1e-41 173.7 333 48.3
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 2.7e-40 171.8 160 57.5
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 6.0e-40 170.6 307 48.2
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 8.7e-39 166.8 170 54.7
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 8.7e-39 166.8 170 54.7
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 1.1e-38 166.4 311 49.2
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 2.5e-38 165.2 311 48.6
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 4.8e-37 161.0 139 61.2
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 1.8e-36 159.1 139 60.4
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 3.1e-36 158.3 141 58.2
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 4.0e-36 157.9 139 58.3
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 5.8e-35 154.1 271 37.3
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 7.6e-35 153.7 311 46.9
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 7.6e-35 153.7 311 46.9
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 7.6e-35 153.7 144 58.3
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 7.6e-35 153.7 143 52.4
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 7.6e-35 153.7 161 49.7
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 1.7e-34 152.5 139 58.3
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 8.4e-34 150.2 170 50.6
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 8.4e-34 150.2 143 51.0
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 8.4e-34 150.2 331 43.8
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.1e-32 145.6 338 34.6
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 3.0e-31 141.7 312 45.5
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 2.5e-30 138.7 252 52.4
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 3.7e-29 134.8 163 47.2
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 2.4e-28 132.1 330 43.6
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 4.5e-27 127.9 256 41.8
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 7.6e-27 127.1 243 37.4
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 3.9e-23 114.8 310 43.2
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 1.5e-22 112.8 266 27.8
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 1.5e-22 112.8 140 45.7
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 9.7e-22 110.2 140 47.1
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 2.2e-21 109.0 317 40.4
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 1.1e-20 106.7 315 41.3
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 5.3e-20 104.4 141 43.3
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 5.9e-19 100.9 140 43.6
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 1.4e-17 96.3 141 41.8
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 1.2e-16 93.2 141 41.8
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 1.2e-16 93.2 141 41.8
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 2.7e-16 92.0 167 40.1
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 3.9e-15 88.2 141 39.0
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 3.9e-15 88.2 140 39.3
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 1.1e-14 86.7 167 37.1
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 5.7e-14 84.3 140 37.9
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 8.2e-13 80.5 140 38.6
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 3.4e-11 75.1 118 40.7
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 3.4e-11 75.1 81 56.8
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 7.7e-11 73.9 106 34.9
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 7.7e-11 73.9 106 34.9
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 5.0e-10 71.2 45 66.7
GSVIVG01013840001 Vitis vinifera HOM05D007570 ORTHO05D009365 5.0e-10 71.2 45 71.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 1.9e-09 69.3 44 65.9
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.5e-09 67.8 249 23.3
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 5.5e-09 67.8 244 23.4
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 5.5e-09 67.8 76 53.9
AagrBONN_evm.TU.Sc2ySwM_117.3529 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-09 67.4 286 23.1
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.2e-08 66.6 244 23.0
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-08 66.6 106 31.1
FAN10G4006 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.2e-08 66.6 172 44.8
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 1.2e-08 66.6 134 26.1
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.1e-08 65.9 249 22.5
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.6e-08 65.1 249 22.5
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.7e-08 64.7 88 46.6
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 6.1e-08 64.3 138 29.0
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 6.1e-08 64.3 45 64.4
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 6.1e-08 64.3 45 64.4
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 1.0e-07 63.5 244 22.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.4e-07 63.2 323 23.2
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 1.4e-07 63.2 101 32.7
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 1.8e-07 62.8 131 31.3
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.8e-07 62.8 140 28.6
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.8e-07 62.8 249 22.1
AagrBONN_evm.TU.Sc2ySwM_340.36 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-07 62.4 342 19.9
AagrBONN_evm.TU.Sc2ySwM_344.335__336 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.0e-07 62.0 310 22.3
SMO203G0052 Selaginella moellendorffii HOM05D005973 ORTHO05D038438 3.0e-07 62.0 97 28.9
Cpa.g.sc50.142 Carica papaya HOM05D002890 ORTHO05D009847 3.9e-07 61.6 264 25.8
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 3.9e-07 61.6 250 22.0
AagrBONN_evm.TU.Sc2ySwM_228.20 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-07 61.2 320 22.2
Lj4g0013262 Lotus japonicus HOM05D000001 ORTHO05D000003 6.7e-07 60.8 133 27.8
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 6.7e-07 60.8 141 31.2
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 8.8e-07 60.5 128 29.7
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 8.8e-07 60.5 249 21.3
SalBow3G4252 Salvia bowleyana HOM05D007570 ORTHO05D009365 8.8e-07 60.5 45 53.3
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.5e-06 59.7 121 32.2
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.5e-06 59.7 121 32.2
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 1.5e-06 59.7 144 29.2
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.5e-06 59.7 244 21.3
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 2.0e-06 59.3 38 63.2
ATR0680G349 Amborella trichopoda HOM05D007570 ORTHO05D009365 2.0e-06 59.3 88 37.5
AagrBONN_evm.TU.Sc2ySwM_340.435 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 59.3 319 21.6
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 2.0e-06 59.3 244 21.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.0e-06 59.3 226 22.6
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 2.0e-06 59.3 123 29.3
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.6e-06 58.9 248 22.2
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.6e-06 58.9 156 25.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.6e-06 58.9 244 20.5
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 2.6e-06 58.9 140 26.4
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.6e-06 58.9 97 29.9
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 3.3e-06 58.5 125 32.0
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 3.3e-06 58.5 203 23.2
AUR62004993 Chenopodium quinoa HOM05D007128 ORTHO05D009059 3.3e-06 58.5 98 30.6
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 3.3e-06 58.5 248 22.2
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.3e-06 58.5 217 23.0
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.3e-06 58.5 248 22.2
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 3.3e-06 58.5 128 29.7
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 3.3e-06 58.5 128 29.7
AagrBONN_evm.TU.Sc2ySwM_344.67 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 58.2 301 20.9
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 4.4e-06 58.2 97 33.0
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.4e-06 58.2 244 22.5
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.4e-06 58.2 244 22.5
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 4.4e-06 58.2 142 26.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 5.7e-06 57.8 228 23.2
AL3G20860 Arabidopsis lyrata HOM05D000855 ORTHO05D008530 5.7e-06 57.8 244 27.9
BcaC05g29690 Brassica carinata HOM05D000855 ORTHO05D008530 5.7e-06 57.8 244 27.9
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 5.7e-06 57.8 244 20.9
Thhalv10020113m.g Eutrema salsugineum HOM05D000855 ORTHO05D008530 5.7e-06 57.8 244 27.5
Sp3g07980 Schrenkiella parvula HOM05D000855 ORTHO05D008530 5.7e-06 57.8 244 27.9
AagrBONN_evm.TU.Sc2ySwM_362.37 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.4e-06 57.4 320 21.6
EL10Ac4g09187 Beta vulgaris HOM05D007128 ORTHO05D009059 7.4e-06 57.4 128 31.2
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 7.4e-06 57.4 110 33.6
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 7.4e-06 57.4 110 33.6
COL.COLO4_27086 Corchorus olitorius HOM05D001673 ORTHO05D002312 7.4e-06 57.4 244 26.6
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 7.4e-06 57.4 244 20.5
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 7.4e-06 57.4 122 30.3
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 7.4e-06 57.4 249 22.1
THA.LOC104826985 Tarenaya hassleriana HOM05D000855 ORTHO05D008530 7.4e-06 57.4 244 27.0
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 7.4e-06 57.4 128 30.5
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 9.7e-06 57.0 108 30.6
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 9.7e-06 57.0 249 20.1
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 9.7e-06 57.0 225 22.2
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 9.7e-06 57.0 98 31.6
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 9.7e-06 57.0 244 20.5
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 9.7e-06 57.0 248 21.4


User provided reference genes

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