Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.0e-42 176.8 124 100.0
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 6.5e-13 77.8 33 100.0
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 1.1e-12 77.0 33 97.0
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 1.5e-12 76.6 33 97.0
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.5e-12 76.6 33 97.0
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.5e-12 76.6 33 97.0
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.5e-12 76.6 33 97.0
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.5e-12 76.6 33 97.0
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 1.9e-12 76.3 33 97.0
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.9e-12 76.3 33 97.0
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.9e-12 76.3 35 94.3
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.5e-12 75.9 33 97.0
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 3.2e-12 75.5 32 100.0
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 3.2e-12 75.5 32 100.0
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 3.2e-12 75.5 32 100.0
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 3.2e-12 75.5 33 97.0
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 4.2e-12 75.1 33 93.9
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 97.0
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 97.0
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 97.0
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 5.5e-12 74.7 33 93.9
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 7.2e-12 74.3 33 93.9
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 7.2e-12 74.3 33 93.9
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 90.9
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 90.9
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 90.9
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 32 96.9
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 9.4e-12 73.9 33 93.9
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 9.4e-12 73.9 33 93.9
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 1.2e-11 73.6 32 96.9
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.2e-11 73.6 37 86.5
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.2e-11 73.6 33 93.9
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.6e-11 73.2 35 88.6
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 90.9
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 90.9
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 90.9
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 93.9
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 93.9
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 93.9
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 1.6e-11 73.2 33 93.9
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 2.1e-11 72.8 33 90.9
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 2.1e-11 72.8 33 90.9
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 2.1e-11 72.8 33 90.9
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.7e-11 72.4 33 90.9
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.7e-11 72.4 33 90.9
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 2.7e-11 72.4 33 90.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 2.7e-11 72.4 32 93.8
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 3.6e-11 72.0 33 90.9
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 4.7e-11 71.6 33 90.9
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 6.1e-11 71.2 37 83.8
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 6.1e-11 71.2 37 83.8
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 1.0e-10 70.5 32 90.6
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 1.4e-10 70.1 33 84.8
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-10 69.7 76 47.4
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 3.0e-10 68.9 45 73.3
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 5.2e-10 68.2 33 90.9
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 5.2e-10 68.2 33 84.8
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 8.8e-10 67.4 37 81.1
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 1.3e-08 63.5 32 84.4


User provided reference genes

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