Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.8e-71 270.8 137 100.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-70 268.9 137 99.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.3e-64 247.7 137 92.0
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.4e-61 239.6 137 86.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-59 233.4 135 85.9
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.3e-59 232.3 133 85.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.0e-59 231.9 135 83.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.9e-59 231.5 135 83.7
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 6.7e-59 230.7 133 84.2
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.1e-58 229.9 133 84.2
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.5e-58 228.8 133 85.0
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.3e-58 228.0 133 83.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 4.3e-58 228.0 135 83.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 5.6e-58 227.6 135 83.7
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-57 226.5 135 81.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 3.7e-57 224.9 133 83.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.7e-57 224.9 137 82.5
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 4.8e-57 224.6 135 81.5
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.2e-57 224.2 133 80.5
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.2e-57 224.2 133 80.5
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 8.2e-57 223.8 134 82.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.4e-56 223.0 137 82.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.8e-56 222.6 135 80.0
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.8e-56 222.6 135 82.2
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.1e-56 221.9 135 80.7
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.1e-56 221.9 135 80.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 4.0e-56 221.5 133 82.0
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 4.0e-56 221.5 133 79.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 4.0e-56 221.5 133 78.9
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 4.0e-56 221.5 135 80.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 5.3e-56 221.1 137 78.8
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.3e-56 221.1 137 81.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 6.9e-56 220.7 135 80.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 9.0e-56 220.3 133 78.9
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.2e-55 219.9 137 79.6
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.2e-55 219.9 133 82.0
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.2e-55 219.9 137 80.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.5e-55 219.5 133 80.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.0e-55 219.2 133 79.7
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.6e-55 218.8 135 79.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-55 218.4 133 78.9
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 4.5e-55 218.0 135 77.8
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.5e-55 218.0 133 79.7
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 4.5e-55 218.0 135 80.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.5e-55 218.0 135 80.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.8e-55 217.6 133 80.5
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 7.6e-55 217.2 130 79.2
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.0e-54 216.9 133 78.9
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.0e-54 216.9 133 78.2
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.3e-54 216.5 135 77.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-54 216.5 133 76.7
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.3e-54 216.5 134 81.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.7e-54 216.1 130 80.0
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.7e-54 216.1 131 80.2
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.7e-54 216.1 133 79.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.7e-54 216.1 137 78.1
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.8e-54 214.9 130 80.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 4.9e-54 214.5 133 77.4
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 6.5e-54 214.2 135 76.3
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 6.5e-54 214.2 135 76.3
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 6.5e-54 214.2 135 78.5
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 6.5e-54 214.2 131 80.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 8.4e-54 213.8 135 76.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 8.4e-54 213.8 135 78.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 8.4e-54 213.8 135 78.5
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.9e-53 212.6 135 75.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.5e-53 212.2 135 77.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.5e-53 212.2 131 80.2
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.1e-53 210.7 133 75.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 9.3e-53 210.3 135 75.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.1e-52 209.1 137 74.5
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.7e-52 208.8 135 74.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.7e-52 208.8 137 73.7
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.6e-52 208.0 131 77.9
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 7.9e-52 207.2 135 74.1
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.9e-52 207.2 133 75.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 7.9e-52 207.2 135 74.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-51 206.5 133 75.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.8e-51 206.1 135 74.1
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 3.0e-51 205.3 135 74.1
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 3.9e-51 204.9 135 74.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 3.9e-51 204.9 135 74.8
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.9e-51 204.9 135 73.3
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 6.7e-51 204.1 135 73.3
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 6.7e-51 204.1 135 73.3
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.5e-50 203.0 131 74.0
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.5e-50 203.0 135 71.9
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.5e-50 203.0 135 73.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-50 202.6 127 78.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 2.5e-50 202.2 135 71.9
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.5e-50 202.2 135 71.9
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.5e-50 202.2 131 72.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 3.3e-50 201.8 135 71.9
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.3e-50 201.8 137 72.3
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.3e-50 201.8 135 71.9
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 5.7e-50 201.1 133 73.7
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 9.7e-50 200.3 135 71.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.3e-49 199.9 135 71.1
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.2e-49 199.1 127 78.0
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.7e-49 198.4 135 69.6
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.8e-49 198.0 135 69.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 8.2e-49 197.2 135 69.6
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.1e-48 196.8 135 68.9
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.4e-48 196.4 133 70.7
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.8e-48 196.1 129 79.1
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.4e-48 195.7 135 69.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.4e-48 195.7 133 69.9
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 9.0e-48 193.7 127 73.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.8e-46 188.3 131 69.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.1e-45 186.8 127 70.9
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.5e-45 185.7 129 68.2
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.5e-45 185.7 131 69.5
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.5e-45 184.5 136 66.9
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 9.4e-45 183.7 131 68.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.7e-44 182.2 145 62.8
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 3.6e-44 181.8 115 68.7
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 4.6e-44 181.4 145 62.1
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.9e-43 178.3 126 68.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 9.7e-42 173.7 120 69.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 4.1e-40 168.3 127 63.0
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.0e-39 166.0 96 82.3
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.9e-39 164.5 131 58.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.7e-38 162.9 133 57.9
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-38 162.9 106 79.2
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.7e-38 162.9 128 62.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.9e-38 162.2 131 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.9e-35 151.8 127 58.3
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 8.5e-30 134.0 89 75.3
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 6.7e-27 124.4 127 48.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.7e-25 119.8 131 50.4
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.2e-25 119.4 127 48.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 5.3e-24 114.8 78 69.2
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.8e-22 108.6 124 44.4
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 3.7e-17 92.0 63 76.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-17 92.0 126 40.5
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.0e-15 86.3 107 46.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.2e-07 60.5 148 31.8


User provided reference genes

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