Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 6.0e-64 247.3 119 100.0
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.8e-61 238.4 116 98.3
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.1e-60 235.0 118 94.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 7.6e-59 230.3 118 92.4
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.7e-58 229.2 118 91.5
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.4e-58 227.3 118 89.8
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-57 226.1 117 90.6
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 7.1e-57 223.8 117 90.6
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.6e-56 221.1 118 89.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.7e-55 216.9 117 87.2
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.9e-54 215.7 117 86.3
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 4.3e-54 214.5 119 85.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.6e-53 212.6 118 85.6
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 2.1e-53 212.2 117 85.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.6e-53 211.5 118 85.6
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 4.8e-53 211.1 117 83.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 4.8e-53 211.1 117 83.8
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.8e-53 211.1 117 83.8
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 8.1e-53 210.3 118 83.9
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.1e-52 209.9 127 80.3
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.8e-52 209.1 118 84.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.1e-52 208.4 118 86.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.1e-52 208.4 108 89.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.0e-52 208.0 118 85.6
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 5.3e-52 207.6 117 82.9
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 6.9e-52 207.2 118 85.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.2e-51 206.5 118 85.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.5e-51 206.1 118 84.7
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.4e-51 204.9 118 84.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 5.8e-51 204.1 107 88.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.8e-51 204.1 118 85.6
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.3e-50 203.0 119 84.0
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.7e-50 202.6 118 84.7
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 2.2e-50 202.2 116 82.8
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.9e-50 201.8 113 85.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.9e-50 201.8 118 84.7
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.8e-50 201.4 117 83.8
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 4.9e-50 201.1 117 83.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 4.9e-50 201.1 117 83.8
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.9e-50 201.1 105 90.5
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 4.9e-50 201.1 118 83.1
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 4.9e-50 201.1 118 83.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.4e-50 200.7 118 83.9
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 6.4e-50 200.7 118 83.9
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.1e-49 199.9 117 81.2
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.1e-49 199.9 173 63.6
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.4e-49 199.5 118 83.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.9e-49 199.1 117 82.1
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.9e-49 199.1 117 83.8
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.9e-49 199.1 105 88.6
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.2e-49 198.4 118 82.2
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.2e-49 198.0 118 82.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 4.2e-49 198.0 118 83.9
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.2e-49 198.0 106 88.7
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.4e-49 197.6 118 82.2
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.4e-49 197.6 118 81.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 7.1e-49 197.2 118 82.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 9.3e-49 196.8 118 83.1
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 9.3e-49 196.8 117 83.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.6e-48 196.1 118 79.7
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.7e-48 195.3 116 83.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.7e-48 195.3 118 82.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.5e-48 194.9 118 81.4
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.6e-48 194.5 118 81.4
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.0e-48 194.1 118 81.4
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.0e-47 193.4 118 80.5
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.3e-47 193.0 118 79.7
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.3e-47 193.0 118 81.4
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-47 192.6 118 82.2
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.7e-47 192.6 120 81.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.3e-47 192.2 118 79.7
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 2.3e-47 192.2 116 78.4
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.0e-47 191.8 118 78.8
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.9e-47 191.4 116 78.4
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.9e-47 191.4 118 79.7
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.1e-47 191.0 118 78.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 5.1e-47 191.0 120 80.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 5.1e-47 191.0 119 79.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.1e-47 191.0 118 79.7
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.1e-46 189.9 118 77.1
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.5e-46 189.5 118 80.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.5e-46 189.5 117 78.6
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.9e-46 189.1 118 79.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.9e-46 189.1 119 79.0
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.5e-46 188.7 116 79.3
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.5e-46 188.7 118 78.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.3e-46 188.3 118 78.8
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 76.7
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.3e-46 188.3 116 79.3
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.3e-46 187.2 119 77.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.3e-45 186.4 107 85.0
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.3e-45 186.4 107 85.0
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-45 186.0 120 77.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 4.8e-45 184.5 116 75.0
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 4.8e-45 184.5 116 75.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.8e-45 184.5 118 76.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.2e-45 184.1 116 78.4
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 6.2e-45 184.1 118 74.6
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.2e-45 184.1 118 74.6
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.2e-45 184.1 118 74.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.4e-44 183.0 119 76.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.4e-44 183.0 118 77.1
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.1e-44 181.8 107 85.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 4.0e-44 181.4 106 85.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 5.3e-44 181.0 116 74.1
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 9.0e-44 180.3 116 75.0
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.2e-43 179.9 118 76.3
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.0e-43 179.1 118 72.9
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 3.4e-43 178.3 118 75.4
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 9.9e-43 176.8 116 73.3
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.3e-42 176.4 118 74.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.3e-42 176.4 140 67.1
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.2e-42 175.6 116 74.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.9e-42 175.3 107 78.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.1e-41 173.3 116 70.7
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.4e-41 171.0 107 79.4
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 7.1e-41 170.6 118 71.2
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.6e-40 167.9 118 69.5
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.0e-40 167.5 112 75.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.0e-39 166.8 156 58.3
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.9e-39 164.9 103 75.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 3.9e-39 164.9 103 75.7
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 3.9e-39 164.9 107 75.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.7e-39 164.1 106 79.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-38 163.3 118 67.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 4.3e-38 161.4 105 76.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.3e-38 161.4 149 57.7
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.6e-38 160.2 106 75.5
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.3e-37 159.8 107 72.9
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.1e-37 159.1 109 72.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.5e-35 152.9 107 69.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 5.8e-35 151.0 81 87.7
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 3.2e-33 145.2 118 66.9
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 5.5e-33 144.4 96 75.0
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 9.3e-33 143.7 80 85.0
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 9.3e-33 143.7 127 63.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 4.6e-32 141.4 81 80.2
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.9e-32 140.6 118 61.0
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.9e-32 140.6 118 61.0
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.9e-32 140.6 118 61.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 7.4e-30 134.0 107 66.4
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 3.7e-29 131.7 74 86.5
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 5.3e-28 127.9 116 56.0
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.3e-26 123.2 134 53.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 5.0e-26 121.3 77 83.1
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.3e-21 106.7 57 87.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.1e-20 103.6 59 79.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.4e-20 102.4 115 45.2
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.0e-19 99.4 76 61.8
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.4e-19 98.6 85 64.7
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.4e-19 98.6 76 63.2
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.3e-18 96.7 59 81.4
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.9e-18 95.5 76 61.8
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.9e-17 92.8 44 90.9
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.9e-17 92.8 49 81.6
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.5e-14 82.4 47 80.9
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.7e-13 79.7 107 42.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.0e-11 72.8 126 35.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-08 63.2 39 71.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.5e-06 56.6 148 31.1


User provided reference genes

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