Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 0.0e+00 1155.6 1079 100.0
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 1.2e-198 698.0 773 76.1
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 4.4e-198 696.0 791 78.6
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 1.3e-197 694.5 774 76.9
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 5.1e-178 629.4 1075 74.3
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.1e-175 621.7 1080 74.6
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.4e-172 611.3 1075 67.1
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 3.5e-171 606.7 1070 71.2
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 4.2e-164 583.2 1094 72.9
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 1.6e-163 581.3 1071 74.5
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 3.0e-162 577.0 810 67.0
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 3.0e-162 577.0 1072 68.8
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 3.3e-161 573.5 1076 70.1
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 4.3e-161 573.2 1075 62.1
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.3e-160 571.6 754 67.0
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 1.3e-160 571.6 1036 72.0
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 1.2e-158 565.1 1071 72.9
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 3.8e-157 560.1 725 64.8
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 1.1e-156 558.5 782 57.3
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.4e-156 558.1 1071 72.7
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 7.1e-156 555.8 719 75.0
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 3.9e-154 550.1 1069 64.5
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 8.7e-154 548.9 1071 73.0
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 7.4e-153 545.8 723 68.2
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 2.1e-152 544.3 755 59.5
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 6.2e-152 542.7 772 70.2
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 8.2e-152 542.3 1063 69.2
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.8e-151 541.2 756 66.7
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 2.4e-151 540.8 1082 64.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 5.3e-151 539.7 772 69.9
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 5.3e-151 539.7 1073 65.7
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 3.4e-150 537.0 1068 70.1
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 1.1e-148 531.9 1071 72.0
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 4.2e-148 530.0 767 69.2
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.3e-146 525.0 770 62.6
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 3.0e-146 523.9 766 61.1
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.5e-145 520.8 771 62.8
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 3.3e-145 520.4 780 63.1
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 3.7e-144 516.9 776 59.4
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 4.8e-144 516.5 766 69.2
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.8e-143 514.6 764 65.7
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 3.4e-142 510.4 759 72.9
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 4.5e-142 510.0 774 64.6
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 2.9e-141 507.3 1075 70.3
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 2.9e-141 507.3 763 60.6
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 5.0e-141 506.5 1073 66.1
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.4e-140 505.0 770 64.9
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.9e-140 504.6 766 68.5
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 3.2e-140 503.8 717 72.4
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 5.5e-140 503.1 763 67.0
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.6e-139 501.5 762 64.4
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 7.9e-139 499.2 762 70.9
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 1.4e-138 498.4 772 64.9
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 2.3e-138 497.7 770 67.4
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 3.0e-138 497.3 768 64.6
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 3.9e-138 496.9 771 65.1
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 6.7e-138 496.1 748 61.2
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 1.5e-137 495.0 769 68.1
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 3.3e-137 493.8 772 64.8
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 5.7e-137 493.0 752 66.0
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 2.8e-136 490.7 732 66.9
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 4.8e-136 490.0 772 64.2
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 1.1e-135 488.8 1033 63.1
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 9.1e-135 485.7 799 62.5
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.6e-134 484.2 799 62.3
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.7e-131 474.2 759 63.2
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 2.7e-131 474.2 769 63.5
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 6.1e-131 473.0 759 63.2
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.4e-130 471.9 756 63.2
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 2.3e-130 471.1 776 59.9
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 7.4e-129 466.1 776 68.0
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 1.1e-127 462.2 853 61.2
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.0e-125 455.7 1083 68.7
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.1e-124 452.2 773 58.1
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 3.3e-121 440.7 715 63.5
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 3.7e-120 437.2 752 65.4
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.1e-119 435.6 752 67.3
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 1.8e-119 434.9 795 63.9
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 2.0e-118 431.4 753 55.6
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.1e-115 421.4 1077 63.8
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 4.2e-100 370.5 650 69.4
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 2.0e-97 361.7 1029 59.9
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 4.4e-89 334.0 778 59.9
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.1e-84 319.3 581 67.0
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 2.8e-75 288.1 702 57.0
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.9e-71 275.4 158 82.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 4.6e-70 270.8 267 53.2
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 2.5e-68 265.0 540 67.8
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 1.4e-66 259.2 193 64.2
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 9.6e-60 236.5 547 57.2
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.3e-59 236.1 560 65.5
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.3e-59 236.1 264 52.3
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 8.1e-59 233.4 556 34.2
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 3.0e-53 214.9 230 51.3
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 2.6e-49 201.8 533 54.2
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 1.3e-45 189.5 215 47.9
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.8e-45 189.1 119 75.6
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 1.8e-45 189.1 588 53.9
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 1.0e-32 146.7 211 41.7
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 8.2e-27 127.1 580 54.5
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.3e-24 119.8 92 65.2
TAR636G2077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.4e-23 116.3 81 74.1
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 2.7e-22 112.1 79 67.1
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 2.5e-20 105.5 169 37.9
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 7.2e-15 87.4 98 45.9
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.2e-14 86.7 82 54.9
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 7.9e-14 84.0 50 78.0
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 5.1e-13 81.3 75 49.3
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 7.4e-12 77.4 120 36.7
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 9.7e-12 77.0 82 48.8
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 1.4e-10 73.2 59 59.3
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.8e-10 72.8 113 35.4
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 5.3e-10 71.2 92 40.2
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 2.0e-09 69.3 142 31.7
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 5.9e-09 67.8 120 33.3
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.0e-08 67.0 137 28.5
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.3e-08 66.6 120 33.3
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 1.7e-08 66.2 109 33.0
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.2e-08 65.9 106 34.9
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 2.2e-08 65.9 106 34.0
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 2.9e-08 65.5 141 31.2
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 3.8e-08 65.1 106 34.0
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 5.0e-08 64.7 119 30.3
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 5.0e-08 64.7 106 33.0
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 6.5e-08 64.3 106 32.1
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 8.5e-08 63.9 195 24.6
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 8.5e-08 63.9 97 35.1
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 8.5e-08 63.9 97 35.1
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 8.5e-08 63.9 132 31.8
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.1e-07 63.5 118 28.8
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.1e-07 63.5 155 28.4
CsaV3_5G040330 Cucumis sativus L. HOM05D002479 ORTHO05D002675 1.1e-07 63.5 155 29.0
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 1.1e-07 63.5 106 33.0
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.1e-07 63.5 109 33.0
Cfa014560 Carpinus fangiana HOM05D002479 ORTHO05D002675 1.5e-07 63.2 118 29.7
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 1.5e-07 63.2 190 27.9
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 1.9e-07 62.8 106 33.0
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 2.5e-07 62.4 92 34.8
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 2.5e-07 62.4 118 31.4
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 2.5e-07 62.4 118 31.4
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 2.5e-07 62.4 118 29.7
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.5e-07 62.4 118 29.7
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.2e-07 62.0 118 29.7
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.2e-07 62.0 118 29.7
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 3.2e-07 62.0 137 27.0
Mapoly0001s0141 Marchantia polymorpha HOM05D001620 ORTHO05D003132 3.2e-07 62.0 140 27.1
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 118 29.7
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 126 27.8
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 4.2e-07 61.6 109 34.9
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 103 35.0
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 4.2e-07 61.6 103 34.0
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.5e-07 61.2 118 28.8
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 5.5e-07 61.2 91 40.7
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 9.4e-07 60.5 118 28.8
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 9.4e-07 60.5 91 39.6
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 9.4e-07 60.5 101 34.7
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.2e-06 60.1 114 28.1
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 1.2e-06 60.1 137 27.7
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.2e-06 60.1 135 28.1
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.6e-06 59.7 89 36.0
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.6e-06 59.7 103 34.0
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 103 34.0
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 103 34.0
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 1.6e-06 59.7 118 29.7
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 2.1e-06 59.3 117 33.3
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 2.1e-06 59.3 103 32.0
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.7e-06 58.9 117 28.2
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 2.7e-06 58.9 93 35.5
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 2.7e-06 58.9 215 25.6
Medtr1g040765 Medicago truncatula HOM05D002479 ORTHO05D002675 2.7e-06 58.9 120 30.8
Cpa.g.sc34.115 Carica papaya HOM05D002479 ORTHO05D002675 3.6e-06 58.5 117 31.6
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 3.6e-06 58.5 92 39.1
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 3.6e-06 58.5 118 28.8
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 3.6e-06 58.5 109 28.4
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 4.7e-06 58.2 105 29.5
CBR_g29447 Chara braunii HOM05D003689 ORTHO05D003950 6.1e-06 57.8 62 40.3
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 6.1e-06 57.8 107 31.8
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 8.0e-06 57.4 118 28.8


User provided reference genes

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