Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.7e-120 434.9 235 100.0
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 9.5e-83 311.2 224 83.0
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.7e-76 290.4 224 74.6
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 8.6e-76 288.1 224 72.8
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.6e-74 282.7 224 72.8
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.1e-73 281.2 222 72.5
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-73 280.8 224 70.1
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 3.4e-72 276.2 224 69.6
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 4.4e-72 275.8 224 68.8
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.7e-71 273.9 224 70.1
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 8.3e-71 271.6 218 69.7
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.1e-70 271.2 225 71.1
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 1.4e-70 270.8 224 70.5
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 2.4e-70 270.0 224 68.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 4.1e-70 269.2 224 69.2
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.1e-70 268.5 224 68.3
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.2e-69 267.7 223 70.4
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.2e-69 267.7 224 68.8
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.2e-69 267.7 224 70.5
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.2e-69 267.7 222 70.3
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.2e-69 267.7 224 66.5
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.6e-69 267.3 226 68.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.6e-69 267.3 224 67.9
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.1e-69 266.9 224 70.5
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.1e-69 266.9 224 66.5
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.6e-69 265.8 220 68.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 4.6e-69 265.8 224 69.2
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 1.0e-68 264.6 224 69.2
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.7e-68 263.8 224 67.4
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 5.1e-68 262.3 230 66.1
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 6.6e-68 261.9 224 66.1
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-67 259.2 223 68.2
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.3e-67 259.2 224 65.6
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 5.6e-67 258.8 225 66.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 9.5e-67 258.1 224 60.3
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-66 257.7 216 66.2
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 1.2e-66 257.7 220 68.6
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.1e-66 256.9 224 67.4
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.8e-66 256.5 243 63.0
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 6.2e-66 255.4 224 67.4
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.1e-65 254.6 224 65.6
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 3.1e-65 253.1 224 65.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 3.1e-65 253.1 224 65.6
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.0e-64 250.4 217 65.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 2.6e-64 250.0 224 66.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 4.4e-64 249.2 224 66.1
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 4.4e-64 249.2 224 67.4
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.7e-63 247.3 224 68.3
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 2.2e-63 246.9 224 66.1
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 8.4e-63 245.0 228 64.5
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.9e-62 243.8 167 80.2
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 4.1e-62 242.7 230 62.2
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.1e-61 240.4 161 79.5
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.7e-61 240.0 170 80.6
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.5e-61 239.6 224 62.9
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 3.5e-61 239.6 224 65.6
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 1.3e-60 237.7 206 68.0
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 3.9e-60 236.1 224 59.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.9e-60 236.1 247 52.6
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 8.7e-60 235.0 235 60.9
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.3e-59 233.0 170 75.9
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 4.3e-59 232.6 223 63.2
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 4.3e-59 232.6 153 79.7
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.2e-58 231.1 159 79.2
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.6e-58 230.7 178 64.0
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 3.6e-58 229.6 161 80.7
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.2e-58 228.8 240 57.5
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.1e-57 228.0 224 58.9
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-57 226.9 215 64.2
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 1.2e-56 224.6 240 56.2
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 1.2e-56 224.6 240 56.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 1.5e-56 224.2 224 60.3
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 2.0e-56 223.8 240 56.2
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 4.4e-56 222.6 227 61.2
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 7.6e-56 221.9 232 57.8
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 7.6e-56 221.9 240 55.8
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-55 221.1 161 78.3
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 4.9e-55 219.2 230 57.8
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 5.4e-54 215.7 165 72.7
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 2.1e-53 213.8 201 62.7
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 2.1e-53 213.8 191 68.1
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 3.5e-53 213.0 226 58.0
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 3.5e-53 213.0 117 82.1
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 4.6e-53 212.6 159 72.3
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.6e-53 212.6 150 75.3
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.0e-52 211.5 178 70.2
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.3e-52 210.3 223 52.5
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 3.0e-52 209.9 216 57.4
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 6.6e-52 208.8 191 67.0
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 5.6e-51 205.7 150 74.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.6e-50 203.0 223 57.4
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 9.0e-49 198.4 117 78.6
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-48 197.6 121 76.9
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.4e-48 196.4 224 56.7
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 4.5e-48 196.1 188 63.3
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 5.8e-48 195.7 224 50.9
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 5.4e-46 189.1 173 63.6
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.2e-45 188.0 190 55.3
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 6.0e-45 185.7 165 61.2
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.0e-44 183.3 180 60.6
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 5.6e-43 179.1 125 79.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.3e-42 177.9 164 66.5
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 4.8e-42 176.0 211 49.3
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 1.8e-41 174.1 257 41.6
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.1e-41 173.3 161 60.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-41 173.3 117 73.5
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 5.3e-41 172.6 133 62.4
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 4.9e-39 166.0 159 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.1e-38 164.9 224 50.0
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-38 164.9 156 66.7
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.4e-38 164.5 117 70.1
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-38 164.1 165 52.1
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.2e-38 162.9 114 67.5
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.1e-37 160.6 225 44.4
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 6.0e-37 159.1 113 65.5
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 6.7e-36 155.6 113 64.6
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-35 154.8 117 59.8
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-35 152.5 99 73.7
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 5.6e-35 152.5 111 64.9
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 7.4e-35 152.1 157 61.1
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.6e-34 151.0 174 52.9
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.6e-34 151.0 226 44.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.1e-34 150.6 99 71.7
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-34 150.2 96 72.9
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 6.9e-33 145.6 101 70.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 6.9e-33 145.6 229 46.3
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-32 144.4 130 68.5
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 2.6e-32 143.7 86 79.1
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.8e-32 142.5 124 57.3
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-31 141.4 81 81.5
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 3.8e-31 139.8 86 76.7
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 8.4e-31 138.7 155 59.4
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.5e-30 137.1 122 56.6
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 7.1e-30 135.6 95 69.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 7.9e-29 132.1 114 59.6
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-28 129.8 154 47.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-27 126.3 151 46.4
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 5.7e-27 125.9 149 46.3
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.3e-26 124.8 74 78.4
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.2e-26 124.0 114 56.1
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 9.0e-25 118.6 133 57.1
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.5e-22 110.5 63 77.8
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 4.2e-22 109.8 81 63.0
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 9.4e-22 108.6 96 59.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.6e-21 106.7 142 44.4
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.6e-21 106.3 114 56.1
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.3e-20 104.0 74 63.5
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-20 103.2 123 48.0
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.2e-18 97.4 104 44.2
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-17 94.7 115 42.6
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-17 94.7 87 56.3
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 4.5e-16 89.7 56 73.2
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.9e-16 89.4 111 46.8
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 5.0e-15 86.3 56 69.6
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 6.5e-15 85.9 85 50.6
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.5e-15 85.9 85 50.6
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.5e-15 85.5 120 41.7
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.1e-13 80.9 123 41.5
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-12 77.8 75 53.3
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.8e-12 77.8 108 44.4
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 8.2e-10 68.9 39 82.1
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-08 65.1 83 47.0
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 3.4e-08 63.5 36 75.0
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 1.0e-07 62.0 151 32.5
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.3e-07 61.6 98 39.8
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 2.9e-07 60.5 58 48.3
FAN12G1843 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-07 60.5 83 43.4
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.9e-07 60.5 64 48.4
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 4.2e-06 56.6 85 44.7


User provided reference genes

Program Settings