Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 2.4e-190 668.7 339 100.0
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.7e-154 548.9 303 89.8
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 3.6e-154 548.5 303 90.4
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 3.6e-154 548.5 303 89.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.8e-153 546.2 303 89.1
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.5e-152 543.1 303 88.8
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.3e-152 542.0 303 87.8
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 5.7e-152 541.2 303 87.1
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.2e-151 539.3 302 88.1
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 3.7e-151 538.5 303 88.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.7e-151 538.5 303 88.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 6.3e-151 537.7 303 88.4
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 6.3e-151 537.7 303 87.1
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 8.2e-151 537.3 303 88.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 3.1e-150 535.4 303 86.1
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 3.1e-150 535.4 303 87.8
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 4.1e-150 535.0 303 86.1
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 7.0e-150 534.3 303 85.8
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 7.0e-150 534.3 303 86.5
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.2e-149 533.5 303 86.5
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.0e-149 532.7 303 86.1
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 2.0e-149 532.7 299 89.3
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.5e-149 531.9 303 85.5
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 4.5e-149 531.6 303 86.1
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 5.9e-149 531.2 302 89.1
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.0e-148 530.4 303 85.1
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.0e-148 530.4 305 85.2
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.0e-148 530.4 347 80.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.7e-148 529.6 305 85.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 2.2e-148 529.3 304 85.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.9e-148 528.9 296 87.8
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 3.8e-148 528.5 305 85.6
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 6.5e-148 527.7 297 86.5
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.5e-147 525.8 308 84.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 4.2e-147 525.0 303 85.1
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.2e-146 523.5 306 84.6
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 6.1e-146 521.2 299 86.6
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 2.3e-145 519.2 304 84.5
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 6.8e-145 517.7 303 84.2
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 6.8e-145 517.7 303 83.2
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.5e-144 516.5 303 83.2
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.5e-144 516.5 303 83.8
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 2.6e-144 515.8 306 84.0
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.3e-143 513.5 306 83.0
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.7e-143 513.1 303 83.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.8e-143 511.5 303 83.2
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.3e-143 510.8 306 82.4
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 8.3e-143 510.8 303 84.2
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 4.1e-142 508.4 299 84.3
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.1e-142 508.4 315 80.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 5.4e-142 508.1 312 80.8
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.6e-141 506.5 303 81.8
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.6e-141 506.5 303 81.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 4.5e-141 505.0 303 81.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.0e-140 503.8 334 76.9
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.3e-140 503.4 308 82.8
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 2.9e-140 502.3 304 80.6
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 3.8e-140 501.9 305 83.3
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 3.8e-140 501.9 299 81.6
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 4.2e-139 498.4 303 80.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 4.7e-138 495.0 303 79.5
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 3.0e-137 492.3 303 79.5
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.2e-137 491.5 303 79.5
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 1.2e-136 490.3 308 77.9
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.2e-136 490.3 304 78.6
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-136 490.3 304 78.6
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-136 490.3 304 78.6
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.2e-136 490.3 304 78.6
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.2e-136 490.3 304 78.6
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 1.5e-136 490.0 298 80.9
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 3.4e-136 488.8 304 79.3
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 3.4e-136 488.8 304 79.3
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 3.4e-136 488.8 304 79.3
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 3.4e-136 488.8 302 79.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 9.8e-136 487.3 304 78.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.2e-135 486.1 302 81.8
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.7e-135 485.3 300 79.0
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 8.3e-135 484.2 304 78.3
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.1e-134 483.8 303 79.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.8e-134 483.0 326 75.2
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.1e-134 482.3 301 77.7
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.1e-134 481.9 302 78.5
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 3.5e-133 478.8 303 77.6
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 4.5e-133 478.4 302 77.8
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.0e-132 477.2 302 77.8
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.3e-132 476.9 302 77.5
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.7e-132 476.5 303 77.2
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 8.6e-132 474.2 303 78.5
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 5.6e-131 471.5 302 78.1
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 7.3e-131 471.1 303 76.6
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 9.5e-131 470.7 314 74.8
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.6e-130 469.9 305 77.0
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.8e-130 469.2 308 77.9
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 2.8e-130 469.2 305 77.0
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 3.6e-130 468.8 309 75.4
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.6e-130 468.8 309 75.4
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 6.1e-130 468.0 303 77.2
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 6.1e-130 468.0 311 74.6
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.0e-129 467.2 308 77.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-128 463.8 314 74.2
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 7.5e-128 461.1 246 92.7
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.7e-127 459.9 314 73.6
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-126 456.8 314 73.2
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 5.4e-126 454.9 303 75.2
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 9.2e-126 454.1 303 76.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 8.9e-121 437.6 301 72.4
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 7.5e-120 434.5 302 75.2
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.9e-119 432.6 251 84.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.4e-118 430.3 297 75.8
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.1e-113 414.1 231 87.4
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.5e-112 410.2 231 86.6
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 5.6e-107 391.7 289 64.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.2e-106 390.6 246 81.3
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.2e-105 385.2 275 76.0
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 5.8e-104 381.7 302 61.3
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 4.9e-103 378.6 278 66.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.1e-102 377.5 303 66.3
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.4e-102 376.3 303 68.0
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 3.2e-102 375.9 279 64.2
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 6.6e-100 368.2 213 85.4
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 4.3e-99 365.5 302 57.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 8.1e-98 361.3 218 81.2
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 5.3e-97 358.6 302 58.3
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.6e-91 337.8 242 74.4
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 3.5e-85 319.3 246 63.8
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 8.7e-76 288.1 301 47.5
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.5e-72 277.3 304 52.6
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.8e-72 275.4 149 89.3
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.2e-70 269.6 309 45.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-66 256.5 159 81.8
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.0e-52 211.5 225 47.6
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.5e-48 196.1 150 66.7
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.2e-44 182.6 112 78.6
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.0e-43 180.6 291 37.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 1.3e-39 167.9 360 32.5
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.9e-38 164.1 193 49.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 2.0e-35 154.1 112 71.4
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-34 151.4 94 75.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.7e-34 149.8 94 74.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.7e-34 149.8 94 74.5
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.1e-33 146.4 132 62.1
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.0e-32 144.1 114 70.2
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 4.5e-32 142.9 95 78.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.0e-20 103.2 69 76.8
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.7e-19 99.4 94 56.4
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.8e-19 98.6 100 55.0
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.1e-17 93.2 53 83.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.9e-16 89.4 59 72.9
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 2.5e-14 84.0 51 78.4
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 4.3e-14 83.2 48 83.3
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 4.3e-14 83.2 48 83.3
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.6e-08 63.2 85 42.4


User provided reference genes

Program Settings