Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.9e-97 357.1 220 100.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.5e-63 245.0 226 66.4
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 6.3e-59 231.5 229 66.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 8.2e-59 231.1 227 65.2
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-58 229.9 224 65.6
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 9.1e-58 227.6 221 66.5
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.4e-57 225.7 221 64.3
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 5.9e-57 224.9 221 64.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.2e-56 223.0 221 63.3
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.8e-56 222.2 221 62.9
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 3.8e-56 222.2 227 64.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.4e-55 220.3 221 63.3
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-54 217.2 220 63.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.6e-54 216.9 230 64.8
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.6e-54 216.9 224 63.8
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.1e-54 216.5 222 64.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.7e-54 216.1 220 62.7
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 4.7e-54 215.3 223 61.9
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 6.1e-54 214.9 227 63.4
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.1e-54 214.9 224 67.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.4e-53 213.8 221 62.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.4e-53 213.8 226 61.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.8e-53 213.4 220 70.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.8e-53 213.4 224 61.6
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.3e-53 213.0 220 59.1
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 2.3e-53 213.0 225 62.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-53 212.6 221 62.0
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.9e-53 212.2 221 62.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.8e-53 211.1 222 63.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.8e-53 211.1 222 63.1
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-52 210.3 221 59.3
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.5e-52 210.3 220 63.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.0e-52 209.9 220 61.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.0e-52 209.9 224 66.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.6e-52 209.5 218 63.8
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.3e-52 209.1 220 62.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 4.4e-52 208.8 220 62.3
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.7e-52 208.4 220 62.7
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 7.4e-52 208.0 220 62.3
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 9.7e-52 207.6 239 58.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.3e-51 207.2 227 57.7
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.7e-51 206.8 220 62.3
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.7e-51 206.8 220 61.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.2e-51 206.5 235 60.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.8e-51 206.1 241 52.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.7e-51 205.7 230 57.0
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.7e-51 205.7 230 57.0
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.8e-51 205.3 221 62.9
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 4.8e-51 205.3 221 62.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 6.3e-51 204.9 220 68.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 6.3e-51 204.9 126 84.9
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.1e-50 204.1 221 59.3
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-50 204.1 220 60.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.4e-50 203.0 221 64.7
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.1e-50 202.6 230 58.3
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.1e-50 202.6 255 56.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.1e-50 202.2 229 58.5
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.1e-50 201.1 127 82.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.1e-50 201.1 241 54.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 9.1e-50 201.1 230 58.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.0e-49 199.9 241 54.4
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.0e-49 199.9 252 61.9
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.6e-49 199.5 220 57.7
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 4.5e-49 198.7 226 65.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 4.5e-49 198.7 240 57.1
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.5e-49 198.7 240 57.1
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 4.5e-49 198.7 224 62.9
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 5.9e-49 198.4 223 61.4
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.9e-49 198.4 216 63.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.7e-49 198.0 249 53.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.0e-48 197.6 126 81.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.0e-48 197.6 220 66.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.0e-48 197.6 220 57.7
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.7e-48 196.8 221 57.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.2e-48 196.4 236 63.1
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 2.9e-48 196.1 220 66.4
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.0e-48 195.3 220 65.9
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 6.5e-48 194.9 208 61.1
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.1e-47 194.1 230 63.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.9e-47 193.4 126 77.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.9e-47 193.4 221 58.4
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.5e-47 193.0 122 81.1
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.5e-47 193.0 208 61.1
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.5e-47 193.0 217 59.4
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 4.2e-47 192.2 227 57.3
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.2e-47 192.2 233 61.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 4.2e-47 192.2 127 78.0
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 7.2e-47 191.4 220 54.1
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 7.2e-47 191.4 236 61.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.6e-46 190.3 217 58.5
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.0e-45 186.0 222 57.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 6.7e-45 184.9 221 55.7
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-44 183.7 127 74.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.7e-44 181.8 220 55.5
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 5.7e-44 181.8 220 57.3
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.3e-43 180.6 224 55.8
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.3e-43 180.6 211 56.9
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-43 180.3 221 55.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.7e-43 180.3 127 75.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 2.2e-43 179.9 221 56.1
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.7e-43 179.1 127 73.2
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.8e-43 178.7 220 57.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.4e-42 177.2 256 52.3
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.4e-42 177.2 109 85.3
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.4e-42 176.4 219 54.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 7.0e-42 174.9 219 55.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 7.0e-42 174.9 124 75.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 9.1e-42 174.5 219 54.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 9.1e-42 174.5 219 54.3
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.2e-41 174.1 227 54.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.7e-41 172.9 200 60.5
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.5e-41 172.2 221 51.6
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.3e-40 170.6 105 84.8
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.9e-40 169.5 227 48.9
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.8e-40 169.1 106 82.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 8.5e-40 167.9 195 59.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.2e-39 166.0 125 72.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 3.2e-39 166.0 217 50.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.4e-36 156.0 204 51.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.4e-36 156.0 204 51.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.5e-36 154.8 215 49.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.7e-35 153.7 95 82.1
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.7e-35 152.5 225 48.9
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 9.1e-34 147.9 223 46.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 7.7e-33 144.8 127 63.8
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-32 143.7 101 76.2
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-32 143.3 132 62.1
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.9e-32 142.9 126 59.5
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.9e-32 142.9 187 56.7
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.8e-32 142.5 127 61.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.0e-32 142.1 185 57.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.5e-32 141.4 109 70.6
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 8.5e-32 141.4 220 46.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-30 137.5 195 52.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.1e-30 136.7 128 59.4
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-30 136.0 134 59.0
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 1.0e-29 134.4 224 43.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.0e-29 134.4 205 56.1
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.4e-28 129.0 130 56.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.8e-27 126.3 154 50.0
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 9.2e-26 121.3 177 53.1
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-25 120.2 226 48.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.0e-24 117.9 103 56.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.5e-23 114.0 232 42.7
CSS0032338 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.6e-23 112.1 90 96.7
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 8.9e-21 104.8 147 56.5
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.4e-20 102.4 82 65.9
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 4.9e-19 99.0 145 54.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-18 96.7 80 66.2
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.2e-18 96.3 152 52.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 7.3e-15 85.1 178 41.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 9.5e-15 84.7 48 85.4
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 2.3e-13 80.1 120 43.3
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.2e-12 77.8 88 47.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.7e-11 72.8 65 58.5
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.5e-09 66.2 150 43.3
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 6.0e-09 65.5 41 70.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.0e-08 64.7 102 42.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 5.0e-08 62.4 37 75.7
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.1e-07 61.2 119 44.5
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 1.2e-06 57.8 125 48.0
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.1e-06 57.0 122 47.5


User provided reference genes

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