Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 2.4e-190 668.7 339 100.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 1.6e-170 602.8 339 90.3
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.8e-166 589.3 329 90.6
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 2.7e-162 575.5 324 87.7
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 8.8e-161 570.5 339 83.5
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 2.6e-160 568.9 339 84.4
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 2.6e-160 568.9 323 87.9
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 4.4e-160 568.2 327 86.2
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 9.7e-160 567.0 338 84.6
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 3.7e-159 565.1 327 86.2
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 4.8e-159 564.7 340 84.1
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 4.8e-159 564.7 340 84.1
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 6.3e-159 564.3 341 83.9
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 9.1e-158 560.5 324 86.4
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 2.0e-157 559.3 357 80.4
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 2.9e-156 555.4 318 85.8
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 5.0e-156 554.7 308 89.3
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 8.5e-156 553.9 320 87.2
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 8.5e-156 553.9 322 87.0
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 1.5e-155 553.1 320 87.2
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 4.2e-155 551.6 339 83.2
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.7e-154 548.9 316 87.0
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 3.6e-154 548.5 316 87.0
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 3.6e-154 548.5 316 86.1
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 3.6e-154 548.5 336 82.1
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 8.0e-154 547.4 320 84.4
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 2.3e-153 545.8 321 85.7
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 5.2e-153 544.7 307 88.6
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 6.7e-153 544.3 317 86.8
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 8.8e-153 543.9 317 86.8
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 8.8e-153 543.9 319 85.6
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 3.3e-152 542.0 309 87.7
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 5.7e-152 541.2 314 85.7
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 7.5e-152 540.8 309 85.4
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 7.5e-152 540.8 316 85.4
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 1.3e-151 540.0 342 80.7
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.3e-151 540.0 323 83.6
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.3e-151 540.0 309 85.8
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.3e-151 540.0 307 86.3
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 1.3e-151 540.0 323 83.9
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 1.3e-151 540.0 313 85.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.7e-151 539.7 325 83.7
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.7e-151 539.7 336 81.2
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 4.8e-151 538.1 307 86.3
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 4.8e-151 538.1 307 87.3
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 8.2e-151 537.3 308 85.7
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.1e-150 537.0 320 84.1
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 3.1e-150 535.4 307 87.0
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 5.3e-150 534.6 307 87.3
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 7.0e-150 534.3 316 84.5
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.7e-149 532.3 317 84.2
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 5.9e-149 531.2 330 82.7
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 5.9e-149 531.2 307 84.7
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.3e-148 530.0 350 79.7
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 2.2e-148 529.3 307 86.3
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.9e-148 528.9 308 85.1
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 2.9e-148 528.9 308 85.1
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 3.8e-148 528.5 319 82.8
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 4.2e-147 525.0 319 83.1
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 7.2e-147 524.2 308 84.7
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.0e-144 516.2 324 79.9
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.4e-144 515.0 376 72.9
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 5.7e-144 514.6 304 83.6
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 5.7e-144 514.6 343 77.6
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 1.7e-143 513.1 310 82.9
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 4.8e-143 511.5 295 88.1
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 5.4e-142 508.1 331 79.5
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.0e-140 503.8 317 80.4
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.0e-140 503.8 317 80.4
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 2.3e-140 502.7 354 75.7
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 3.8e-140 501.9 305 80.7
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 4.2e-139 498.4 307 79.2
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 3.6e-138 495.4 499 57.9
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 6.8e-137 491.1 319 78.4
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 3.1e-134 482.3 344 73.8
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 5.9e-133 478.0 311 79.4
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 1.7e-132 476.5 307 79.2
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 5.0e-132 474.9 322 75.2
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.5e-131 473.4 352 68.8
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 9.5e-131 470.7 313 75.1
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.2e-130 470.3 317 76.0
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.0e-129 467.2 316 76.9
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 7.5e-128 461.1 324 73.1
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 7.0e-126 454.5 419 59.9
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 5.0e-124 448.4 280 80.7
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 3.3e-123 445.7 289 78.5
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 5.6e-123 444.9 309 76.4
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.3e-121 439.5 329 72.9
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.2e-120 437.2 306 72.5
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 2.0e-120 436.4 308 71.1
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 9.2e-118 427.6 279 79.6
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 6.0e-117 424.9 252 82.9
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 3.9e-116 422.2 315 67.0
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 3.9e-116 422.2 306 68.6
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.6e-116 421.0 269 78.1
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 3.3e-115 419.1 239 85.4
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 4.3e-115 418.7 307 71.7
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 9.5e-115 417.5 240 86.7
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.2e-106 390.6 296 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 9.9e-104 380.9 262 70.6
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.7e-103 380.2 219 85.8
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.8e-103 379.0 255 74.9
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 2.1e-101 373.2 244 77.0
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 9.6e-99 364.4 339 59.3
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.2e-94 349.0 228 74.6
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 7.1e-94 348.2 210 81.0
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.1e-91 340.9 307 61.2
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 3.1e-89 332.8 299 56.2
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 2.7e-77 293.1 177 81.4
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.3e-76 290.8 184 78.3
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 3.7e-74 282.7 225 68.9
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 4.8e-74 282.3 302 51.0
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 3.5e-69 266.2 158 82.9
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-67 260.4 488 37.5
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 4.8e-66 255.8 175 72.0
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 7.7e-64 248.4 157 80.3
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 2.2e-58 230.3 120 91.7
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 6.3e-58 228.8 143 80.4
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 8.2e-58 228.4 120 91.7
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 7.7e-48 195.3 113 84.1
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.0e-47 194.9 228 50.4
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 3.3e-43 179.9 270 36.3
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.5e-40 169.9 99 81.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 3.5e-32 143.3 287 32.8
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 4.7e-29 132.9 66 93.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.5e-27 127.9 325 28.0
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.4e-25 120.6 64 92.2
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 4.1e-25 119.8 75 85.3
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.6e-24 117.9 58 98.3
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.7e-24 117.1 63 87.3
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.3e-23 114.8 56 98.2
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 8.6e-23 112.1 70 74.3
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 3.4e-19 100.1 67 77.6
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.0e-12 78.6 60 65.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 2.6e-11 73.9 43 81.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-10 70.9 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 1.0e-07 62.0 55 58.2
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 4.3e-06 56.6 102 33.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 7.3e-06 55.8 110 32.7


User provided reference genes

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