Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010831 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.7e-183 646.0 359 100.0
CSS0030029 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D005049 6.2e-48 195.7 132 80.3
Actinidia14961 Actinidia chinensis HOM05D000215 ORTHO05D005049 4.8e-32 142.9 139 59.0
CSS0019138 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D005049 4.1e-31 139.8 131 61.1
Dinv05164 Davidia involucrata HOM05D000215 ORTHO05D005049 3.0e-26 123.6 138 55.1
vmacro10640 Vaccinium macrocarpon HOM05D000215 ORTHO05D005049 2.2e-24 117.5 140 51.4
Dinv12997 Davidia involucrata HOM05D000215 ORTHO05D005049 2.8e-24 117.1 140 52.9
Actinidia36676 Actinidia chinensis HOM05D000215 ORTHO05D005049 2.4e-23 114.0 138 49.3
Rhsim09G0098300 Rhododendron simsii HOM05D000215 ORTHO05D005049 7.7e-22 109.0 140 51.4
Lj6A747G70 Lonicera japonica HOM05D000215 ORTHO05D005049 5.0e-21 106.3 139 47.5
Actinidia13026 Actinidia chinensis HOM05D000215 ORTHO05D005049 8.5e-21 105.5 75 66.7
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 1.1e-20 105.1 125 57.6
Hma1.2p1_1319F.1_g275230 Hydrangea macrophylla HOM05D000215 ORTHO05D005049 2.1e-19 100.9 140 43.6
DCAR_026770 Daucus carota HOM05D000215 ORTHO05D005049 4.7e-19 99.8 139 46.0
MSTRG.13577 Avicennia marina HOM05D000215 ORTHO05D005049 7.9e-19 99.0 139 46.0
Sopen04g002720 Solanum pennellii HOM05D000215 ORTHO05D005049 1.0e-18 98.6 139 44.6
PGSC0003DMG400005987 Solanum tuberosum HOM05D000215 ORTHO05D005049 1.4e-18 98.2 139 43.2
PGSC0003DMG400030547 Solanum tuberosum HOM05D000215 ORTHO05D005049 1.4e-18 98.2 136 46.3
Nitab4.5_0007425g0030 Nicotiana tabacum HOM05D000215 ORTHO05D005049 3.0e-18 97.1 145 44.1
CAN.G359.11 Capsicum annuum HOM05D000215 ORTHO05D005049 1.5e-17 94.7 139 42.4
Solyc05g008230.3 Solanum lycopersicum HOM05D000215 ORTHO05D005049 2.0e-17 94.4 136 44.1
Solyc04g007640.3 Solanum lycopersicum HOM05D000215 ORTHO05D005049 2.6e-17 94.0 139 42.4
Sopen05g004080 Solanum pennellii HOM05D000215 ORTHO05D005049 5.7e-17 92.8 136 43.4
Nitab4.5_0001832g0010 Nicotiana tabacum HOM05D000215 ORTHO05D005049 1.7e-16 91.3 139 44.6
CAN.G1334.5 Capsicum annuum HOM05D000215 ORTHO05D005049 2.2e-16 90.9 145 43.4
CSS0014280 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D024710 3.7e-16 90.1 129 45.7
Migut.E00414 Erythranthe guttata HOM05D000215 ORTHO05D005049 4.8e-16 89.7 130 43.1
Peaxi162Scf00253g01410 Petunia axillaris HOM05D000215 ORTHO05D005049 6.3e-16 89.4 141 45.4
Nitab4.5_0004776g0040 Nicotiana tabacum HOM05D000215 ORTHO05D005049 1.1e-15 88.6 139 46.0
MSTRG.2182 Avicennia marina HOM05D000215 ORTHO05D005049 3.1e-15 87.0 139 41.0
CSS0004257 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.1e-15 87.0 128 57.0
CSS0017473 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.1e-15 87.0 128 57.0
CSS0021320 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.1e-15 87.0 128 57.0
Cc11_g08810 Coffea canephora HOM05D000215 ORTHO05D005049 3.1e-15 87.0 142 42.3
TAR629G2870 Trochodendron aralioides HOM05D000215 ORTHO05D005049 4.1e-15 86.7 133 41.4
CSS0013580 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.1e-15 85.5 128 56.2
EL10Ac6g14228 Beta vulgaris HOM05D000215 ORTHO05D005049 4.5e-14 83.2 135 41.5
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.5e-14 83.2 184 45.7
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.5e-14 83.2 184 45.7
CSS0023792 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.5e-14 83.2 128 60.2
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.7e-13 81.3 184 45.7
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.7e-13 81.3 184 45.7
Rhsim12G0031800 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.9e-13 80.5 126 40.5
CSS0050513 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.5e-13 79.3 257 38.9
SGA_v2.0_scaffold50G18525 Striga asiatica HOM05D000215 ORTHO05D005049 6.5e-13 79.3 114 41.2
Rhsim05G0091700 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.9e-12 77.8 126 40.5
Rhsim05G0092900 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.9e-12 77.8 126 40.5
CSS0038450 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.5e-12 77.4 222 35.1
Rhsim04G0125600 Rhododendron simsii HOM05D001576 ORTHO05D000401 5.5e-12 76.3 124 39.5
Sc04g0005660 Simmondsia chinensis HOM05D000215 ORTHO05D005049 7.2e-12 75.9 124 41.1
AUR62014201 Chenopodium quinoa HOM05D000215 ORTHO05D005049 9.4e-12 75.5 133 39.1
MSTRG.892 Avicennia marina HOM05D000215 ORTHO05D005049 1.2e-11 75.1 141 36.2
DCAR_023611 Daucus carota HOM05D000215 ORTHO05D005049 1.6e-11 74.7 130 40.8
AUR62041234 Chenopodium quinoa HOM05D000215 ORTHO05D005049 2.1e-11 74.3 133 38.3
QL01p001904 Quercus lobata HOM05D000215 ORTHO05D005049 2.1e-11 74.3 139 39.6
Eucgr.G02194 Eucalyptus grandis HOM05D000215 ORTHO05D005049 4.7e-11 73.2 140 40.7
Ah.03g137260 Amaranthus hybridus HOM05D000215 ORTHO05D005049 8.0e-11 72.4 130 36.9
Haze_05842 Corylus avellana HOM05D001081 ORTHO05D003320 1.8e-10 71.2 132 40.2
Hund24986 Selenicereus undatus HOM05D000215 ORTHO05D005049 1.8e-10 71.2 77 46.8
Cfa008599 Carpinus fangiana HOM05D000215 ORTHO05D005049 2.3e-10 70.9 139 38.1
Oeu022839.1 Olea europaea HOM05D000215 ORTHO05D005049 3.0e-10 70.5 122 43.4
Rhsim12G0116000 Rhododendron simsii HOM05D028291 ORTHO05D020238 3.0e-10 70.5 137 37.2
QL02p009469 Quercus lobata HOM05D001576 ORTHO05D000401 1.1e-09 68.6 84 45.2
PGR119G1977 Punica granatum HOM05D000215 ORTHO05D005049 2.0e-09 67.8 141 34.8
Nn4g24128 Nelumbo nucifera HOM05D000215 ORTHO05D005049 4.4e-09 66.6 133 34.6
SGA_v2.0_scaffold38G15075 Striga asiatica HOM05D000215 ORTHO05D005049 4.4e-09 66.6 133 41.4
CiPaw.05G248800 Carya illinoinensis HOM05D000215 ORTHO05D005049 5.7e-09 66.2 139 37.4
Oeu059505.1 Olea europaea HOM05D000215 ORTHO05D005049 9.7e-09 65.5 140 38.6
CSS0010221 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D020238 1.3e-08 65.1 80 43.8
Haze_11014 Corylus avellana HOM05D000215 ORTHO05D005049 1.7e-08 64.7 139 36.0
Hma1.2p1_0324F.1_g125640 Hydrangea macrophylla HOM05D001576 ORTHO05D000401 4.8e-08 63.2 77 42.9
Lj3A874G70 Lonicera japonica HOM05D000215 ORTHO05D005049 1.4e-07 61.6 139 39.6
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.1e-07 60.5 178 33.7
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.1e-07 60.5 178 33.7
Oeu055000.1 Olea europaea HOM05D000215 ORTHO05D005049 5.3e-07 59.7 103 40.8
Haze_20407 Corylus avellana HOM05D058381 ORTHO05D020238 1.2e-06 58.5 74 40.5
GSVIVG01011767001 Vitis vinifera HOM05D000215 ORTHO05D005049 1.2e-06 58.5 138 38.4
Haze_08540 Corylus avellana HOM05D058381 ORTHO05D020238 1.6e-06 58.2 77 39.0
Manes.17G075700 Manihot esculenta HOM05D000215 ORTHO05D005049 2.0e-06 57.8 209 25.8
Lsat_1_v5_gn_8_43480 Lactuca sativa HOM05D000215 ORTHO05D005049 2.6e-06 57.4 130 39.2
COL.COLO4_20472 Corchorus olitorius HOM05D000215 ORTHO05D005049 4.5e-06 56.6 139 36.7
Potri.010G113900 Populus trichocarpa HOM05D000215 ORTHO05D005049 4.5e-06 56.6 125 33.6
Haze_12994 Corylus avellana HOM05D001576 ORTHO05D000401 7.7e-06 55.8 82 43.9


User provided reference genes

Program Settings