Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 4.6e-143 511.1 246 100.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.8e-108 395.6 239 79.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.2e-104 381.7 237 78.5
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-102 377.1 237 74.7
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.8e-102 376.3 234 77.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.3e-102 375.9 237 77.2
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 5.1e-102 374.8 249 74.3
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 6.7e-102 374.4 234 74.8
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 8.8e-102 374.0 240 74.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 8.8e-102 374.0 240 74.6
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.0e-101 372.9 237 76.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.5e-101 372.5 240 74.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.3e-101 372.1 234 79.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 4.3e-101 371.7 237 75.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.3e-100 370.2 258 71.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.8e-100 369.0 236 76.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.7e-100 368.6 234 77.8
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.7e-100 368.6 243 76.1
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-99 367.1 234 75.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.1e-99 367.1 237 75.1
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.4e-99 366.7 237 75.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 4.1e-99 365.2 240 74.2
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 5.3e-99 364.8 240 74.2
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.5e-98 363.2 239 74.9
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.5e-98 363.2 238 75.6
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.5e-98 363.2 240 73.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.9e-98 361.3 234 73.5
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.7e-98 360.9 234 73.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 7.7e-98 360.9 234 75.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.0e-97 360.5 240 75.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.2e-97 359.4 240 70.8
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.9e-97 359.0 235 73.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.8e-97 358.6 243 72.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.0e-97 358.2 234 73.1
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 6.5e-97 357.8 240 73.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 6.5e-97 357.8 240 70.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.1e-96 357.1 237 72.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.9e-96 356.3 237 73.4
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.9e-96 356.3 247 72.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.5e-96 355.9 236 73.7
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 4.2e-96 355.1 243 72.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 5.5e-96 354.8 234 72.6
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.5e-96 354.8 235 71.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 7.2e-96 354.4 237 73.4
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.2e-95 353.6 239 74.1
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.6e-95 353.2 238 74.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 6.1e-95 351.3 243 72.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 7.9e-95 350.9 246 72.0
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.8e-94 349.7 240 71.7
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.3e-94 349.4 240 71.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.3e-94 349.4 237 70.5
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.0e-94 349.0 238 73.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.0e-94 349.0 248 70.2
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.0e-94 349.0 237 72.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.9e-94 348.6 238 73.5
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 3.9e-94 348.6 269 66.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.5e-93 346.7 247 70.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.4e-93 344.4 240 69.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.7e-92 343.2 239 72.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.7e-92 343.2 237 69.6
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.8e-92 342.4 243 70.4
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.8e-92 342.4 239 69.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.7e-92 342.0 235 69.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 3.7e-92 342.0 239 68.2
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-91 340.5 235 68.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.1e-91 340.5 254 68.1
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.8e-91 339.7 237 69.2
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.8e-91 339.7 243 70.0
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.1e-91 339.0 240 70.0
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 5.3e-91 338.2 234 69.2
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 9.1e-91 337.4 237 70.0
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 9.1e-91 337.4 237 70.5
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.6e-90 335.9 231 70.6
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.5e-90 335.5 236 69.9
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-90 335.5 236 69.9
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.5e-90 335.5 235 70.6
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 5.9e-90 334.7 243 69.1
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 5.9e-90 334.7 237 68.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.7e-89 333.2 247 66.8
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.7e-89 333.2 236 69.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.9e-89 332.4 234 70.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 5.0e-89 331.6 238 69.3
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 6.5e-89 331.3 234 71.8
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-88 330.5 240 66.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-88 330.5 242 66.9
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.5e-88 330.1 239 69.9
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.2e-88 328.9 239 68.2
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 3.2e-88 328.9 235 69.4
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.2e-88 328.9 236 69.1
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 9.4e-88 327.4 240 66.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-87 327.0 238 68.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.2e-87 327.0 241 65.6
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.6e-87 326.6 301 58.1
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.1e-87 326.2 239 68.2
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 8.0e-87 324.3 239 66.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.4e-86 323.6 234 66.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-86 323.2 237 67.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-86 323.2 237 67.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.8e-86 323.2 237 67.9
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.0e-86 322.4 234 66.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 5.2e-86 321.6 238 66.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 5.2e-86 321.6 237 67.9
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.0e-85 319.7 239 66.5
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.4e-85 318.5 238 65.5
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 7.5e-85 317.8 240 67.1
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.8e-84 315.8 235 66.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.7e-84 315.5 185 79.5
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.3e-84 314.7 203 73.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.3e-83 311.6 185 80.0
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.6e-82 310.1 240 64.6
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 7.7e-82 307.8 234 66.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.3e-81 307.0 236 64.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 8.5e-81 304.3 197 73.1
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.2e-79 300.4 235 62.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.0e-78 297.4 185 74.1
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.0e-78 295.8 178 79.2
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 6.3e-76 288.1 195 71.8
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 8.3e-76 287.7 251 58.6
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.8e-75 286.6 172 79.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.1e-75 285.8 230 63.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.6e-74 283.5 310 53.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.7e-74 282.7 241 63.5
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 3.5e-74 282.3 193 72.5
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.5e-72 276.9 175 77.7
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.5e-72 275.0 237 58.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 9.4e-72 274.2 172 75.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.7e-71 271.9 212 63.2
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.4e-70 270.4 160 81.9
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.0e-69 266.5 178 71.3
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 4.5e-66 255.4 231 56.3
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 4.5e-66 255.4 237 57.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-65 253.8 150 82.7
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.0e-62 242.7 183 65.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.8e-55 219.5 238 50.8
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.2e-51 206.1 250 51.6
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.3e-49 199.9 127 75.6
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.5e-48 197.2 154 63.0
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.5e-48 196.4 168 58.9
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-46 191.0 215 49.8
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-46 189.5 127 73.2
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-46 189.5 337 38.0
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.3e-44 184.1 156 59.0
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.9e-44 182.2 157 56.1
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 5.4e-43 178.7 148 60.8
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 9.2e-43 177.9 137 63.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 6.8e-38 161.8 250 36.8
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-34 149.1 95 74.7
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.7e-33 147.1 127 58.3
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.5e-32 144.1 299 35.5
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 9.9e-29 131.3 259 33.6
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.9e-27 127.1 73 78.1
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.2e-27 126.3 175 44.6
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.2e-27 125.9 99 62.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.4e-22 110.2 166 42.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 8.4e-20 101.7 151 43.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.4e-19 99.0 60 73.3
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-17 94.0 79 55.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.8e-15 85.9 121 45.5
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-14 84.0 59 66.1
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.4e-14 83.6 84 51.2
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.3e-09 67.0 51 60.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.5e-08 63.5 63 47.6
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.5e-08 63.5 63 47.6
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.1e-07 60.5 57 52.6
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.8e-07 60.1 33 84.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.8e-07 60.1 33 84.8
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.4e-06 57.0 40 57.5


User provided reference genes

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