Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 0.0e+00 1681.4 921 100.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1243.4 926 70.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1087.8 928 62.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 7.4e-295 1017.3 880 59.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 7.6e-292 1007.3 917 58.0
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.4e-282 976.5 888 57.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 2.5e-282 975.7 877 57.9
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.9e-281 970.7 885 57.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.0e-276 956.1 881 56.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 3.4e-276 955.3 913 56.0
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.2e-274 948.7 914 58.6
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-272 943.3 894 60.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 4.8e-270 934.9 876 55.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.7e-267 926.4 881 54.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.2e-267 926.0 921 55.3
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.9e-267 925.6 885 60.0
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.5e-267 924.1 882 55.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.1e-266 923.7 881 54.6
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.9e-266 922.9 939 52.9
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 4.7e-265 918.3 880 55.8
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 3.0e-264 915.6 878 55.2
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 3.3e-263 912.1 879 55.2
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 7.5e-263 911.0 880 55.6
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.7e-262 909.8 878 54.6
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.8e-262 909.1 889 54.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 8.2e-262 907.5 934 53.6
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 5.3e-261 904.8 832 61.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 5.0e-259 898.3 908 56.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.7e-257 892.5 872 59.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 6.8e-256 887.9 876 53.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 6.8e-256 887.9 877 52.6
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.4e-255 885.6 762 59.1
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.2e-254 882.9 893 54.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-253 880.6 882 53.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.4e-253 880.2 921 52.8
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.0e-251 874.0 882 58.2
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.2e-251 872.8 842 62.2
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 3.8e-251 872.1 890 52.0
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 8.5e-251 870.9 901 52.8
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.1e-250 870.5 880 51.6
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-250 870.5 934 50.1
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.5e-250 870.2 924 50.6
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.5e-250 868.2 934 50.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.8e-249 865.9 923 52.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 6.1e-249 864.8 907 52.0
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-248 864.0 864 53.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.2e-248 861.7 838 54.2
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-247 859.4 934 50.1
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.6e-247 859.4 934 50.2
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.3e-246 857.1 851 57.9
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-246 855.5 934 49.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.1e-245 854.0 908 51.5
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-245 852.8 887 51.6
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 4.1e-245 852.0 850 53.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.4e-245 851.7 891 57.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.9e-244 848.2 927 54.9
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.0e-240 837.4 850 52.1
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.0e-240 835.5 847 53.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.6e-239 832.8 901 51.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.3e-238 827.8 850 52.2
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.1e-237 827.4 878 50.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.0e-236 823.2 882 50.8
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.6e-233 812.4 949 48.2
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.7e-233 812.0 874 51.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 8.0e-233 811.2 940 47.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-231 806.6 873 50.5
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.0e-231 806.6 959 48.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.6e-231 806.2 863 49.7
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 7.5e-231 804.7 886 49.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.3e-226 789.3 908 47.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 3.7e-222 775.8 891 49.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-221 773.1 1336 37.2
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.5e-218 763.1 850 54.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 4.4e-215 752.3 624 61.5
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-211 740.3 892 50.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.6e-210 735.3 884 44.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.4e-207 725.7 857 47.8
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 3.9e-203 712.6 756 58.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 6.2e-201 705.3 883 47.0
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.1e-200 704.5 851 45.4
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-197 694.5 941 44.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-196 690.3 941 44.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.0e-184 648.3 936 43.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 4.5e-183 646.0 832 42.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.0e-182 644.8 902 45.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.5e-181 640.2 883 43.5
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.5e-180 636.3 921 42.1
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-178 630.9 879 43.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.9e-178 630.6 879 43.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.0e-174 618.2 862 43.9
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-174 617.5 935 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.2e-174 617.1 926 42.1
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.5e-174 615.5 630 53.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 6.5e-174 615.5 941 41.9
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.2e-173 613.2 934 41.4
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.2e-173 612.8 934 41.3
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 6.1e-172 609.0 1377 32.4
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.7e-169 600.9 848 41.9
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-168 598.2 927 41.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.3e-168 595.9 898 43.3
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 6.9e-168 595.5 849 42.0
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.1e-168 595.1 873 46.8
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.0e-166 591.7 852 42.0
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 6.5e-166 589.0 858 41.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-165 588.2 521 58.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-164 584.3 927 39.8
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.7e-164 582.8 927 39.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.1e-160 570.1 901 40.2
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-159 567.8 944 41.3
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.3e-158 564.7 851 39.8
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.3e-153 545.8 410 67.1
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.1e-152 543.1 464 61.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.1e-149 535.0 633 45.2
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.8e-147 527.7 577 51.5
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.9e-131 472.2 456 55.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-122 445.3 336 65.8
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.2e-116 425.2 322 66.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.2e-107 393.3 648 38.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 6.4e-105 386.3 312 61.9
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.2e-104 384.0 436 49.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.3e-93 347.4 363 51.5
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.0e-91 340.5 409 51.8
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 9.9e-90 335.9 387 45.2
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.0e-87 326.6 796 31.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.0e-86 325.9 799 31.0
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.0e-86 324.3 1093 25.3
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.1e-86 323.6 572 38.5
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.3e-81 308.9 270 58.1
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.0e-79 300.1 387 44.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 1.0e-78 299.3 392 44.6
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.1e-77 295.8 411 43.1
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-73 282.3 355 46.2
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.1e-68 265.0 196 64.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.4e-66 257.7 504 34.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.2e-65 255.0 470 34.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-64 251.9 347 41.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.5e-61 241.5 623 30.0
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.8e-60 238.0 336 56.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-59 235.0 423 35.2
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.2e-58 232.6 178 63.5
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.5e-58 232.3 181 63.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.0e-50 205.3 230 48.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.1e-48 199.5 336 41.1
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-45 189.1 250 41.6
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-44 186.0 238 43.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.2e-44 185.3 119 73.9
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 8.5e-41 173.3 139 61.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 4.8e-36 157.5 198 43.9
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 4.8e-36 157.5 233 42.5
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 5.9e-34 150.6 326 32.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.5e-33 147.1 145 53.1
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.5e-33 146.7 184 47.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-32 146.0 358 30.7
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.9e-32 145.6 163 50.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.5e-32 145.2 125 59.2
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 3.6e-31 141.4 133 54.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 4.7e-31 141.0 114 64.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.8e-30 139.0 89 77.5
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 7.5e-29 133.7 100 65.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.1e-27 129.8 90 67.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-25 123.2 80 73.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.2e-25 122.1 78 71.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 8.5e-25 120.2 84 65.5
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 5.5e-24 117.5 125 48.8
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 6.1e-23 114.0 180 36.7
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 4.4e-21 107.8 120 45.0
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.5e-18 97.8 68 73.5
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 1.0e-17 96.7 905 26.5
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-17 94.7 105 45.7
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.8e-15 88.6 151 35.8
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-14 86.3 61 62.3
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 2.3e-14 85.5 76 52.6
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 2.0e-13 82.4 88 54.5
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-13 81.6 76 53.9
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.4e-13 81.6 102 44.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.2e-12 79.0 76 52.6
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 7.0e-11 73.9 826 26.9
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 1.0e-09 70.1 83 48.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 9.5e-08 63.5 43 67.4
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.2e-07 63.2 89 41.6


User provided reference genes

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