Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007677 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 6.8e-62 240.7 145 100.0
CSS0010798 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 6.8e-62 240.7 145 100.0
Actinidia22237 Actinidia chinensis HOM05D002142 ORTHO05D001189 5.6e-24 114.8 71 83.1
vmacro00882 Vaccinium macrocarpon HOM05D002142 ORTHO05D001189 9.6e-24 114.0 73 80.8
Dinv08692 Davidia involucrata HOM05D002142 ORTHO05D001189 2.1e-23 112.8 72 80.6
Rhsim02G0255400 Rhododendron simsii HOM05D002142 ORTHO05D001189 1.4e-22 110.2 77 77.9
TAR365G0293 Trochodendron aralioides HOM05D002142 ORTHO05D001189 1.4e-22 110.2 74 79.7
MBI18_g28921_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D001189 1.8e-22 109.8 74 74.3
Nn4g25267 Nelumbo nucifera HOM05D002142 ORTHO05D001189 5.8e-21 104.8 65 80.0
SGA_v2.0_scaffold88G27237 Striga asiatica HOM05D002142 ORTHO05D001189 1.3e-20 103.6 81 70.4
THA.LOC104806451 Tarenaya hassleriana HOM05D002142 ORTHO05D001189 1.7e-20 103.2 73 71.2
COL.COLO4_10855 Corchorus olitorius HOM05D002142 ORTHO05D001189 2.2e-20 102.8 73 75.3
Lj2A149G60 Lonicera japonica HOM05D002142 ORTHO05D001189 3.8e-20 102.1 72 75.0
Nn4g25332 Nelumbo nucifera HOM05D002142 ORTHO05D001189 3.8e-20 102.1 71 73.2
Duzib205G0837 Durio zibethinus HOM05D002142 ORTHO05D001189 8.4e-20 100.9 73 74.0
MBI18_g03861_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D001189 1.1e-19 100.5 68 77.9
QL02p026881 Quercus lobata HOM05D002142 ORTHO05D001189 1.1e-19 100.5 71 73.2
Thecc.03G214700 Theobroma cacao HOM05D002142 ORTHO05D001189 1.1e-19 100.5 73 74.0
Gohir.D11G017500 Gossypium hirsutum HOM05D002142 ORTHO05D001189 1.9e-19 99.8 73 72.6
Gorai.007G018500 Gossypium raimondii HOM05D002142 ORTHO05D001189 1.9e-19 99.8 73 72.6
Prupe.5G136300 Prunus persica HOM05D002142 ORTHO05D001189 1.9e-19 99.8 75 68.0
CANSAT01G1306 Cannabis sativa HOM05D002142 ORTHO05D001189 3.2e-19 99.0 72 69.4
TWI81G0844 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 4.2e-19 98.6 77 66.2
Oeu063646.1 Olea europaea HOM05D002142 ORTHO05D001189 5.5e-19 98.2 80 73.8
Aqoxy4G03002 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 7.1e-19 97.8 80 68.8
TWI15G0084 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 7.1e-19 97.8 77 67.5
CDE02G3369 Ceratophyllum demersum HOM05D002142 ORTHO05D001189 1.2e-18 97.1 77 64.9
CDE09G0071 Ceratophyllum demersum HOM05D002142 ORTHO05D001189 1.2e-18 97.1 72 68.1
Aqoxy2G02759 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 1.6e-18 96.7 75 73.3
MD14G1142000 Malus domestica HOM05D002142 ORTHO05D001189 1.6e-18 96.7 77 62.3
Ca_09942_v3 Cicer arietinum L. HOM05D002142 ORTHO05D001189 2.1e-18 96.3 73 68.5
Ca_09958_v3 Cicer arietinum L. HOM05D002142 ORTHO05D001189 2.1e-18 96.3 73 68.5
Eucgr.L00343 Eucalyptus grandis HOM05D002142 ORTHO05D001189 2.7e-18 95.9 77 64.9
DCAR_023771 Daucus carota HOM05D002142 ORTHO05D001189 7.9e-18 94.4 69 68.1
MD06G1126300 Malus domestica HOM05D002142 ORTHO05D001189 1.0e-17 94.0 78 62.8
Oeu020470.1 Olea europaea HOM05D002142 ORTHO05D001189 1.0e-17 94.0 81 69.1
Sed0009239 Sechium edule HOM05D002142 ORTHO05D001189 1.0e-17 94.0 75 65.3
vmacro11473 Vaccinium macrocarpon HOM05D002142 ORTHO05D001189 1.0e-17 94.0 71 70.4
Migut.E00710 Erythranthe guttata HOM05D002142 ORTHO05D001189 1.3e-17 93.6 79 70.9
Gohir.A02G094700 Gossypium hirsutum HOM05D002142 ORTHO05D001189 1.3e-17 93.6 78 67.9
Lj5g0019010 Lotus japonicus HOM05D002142 ORTHO05D001189 1.8e-17 93.2 79 68.4
Gohir.D03G088800 Gossypium hirsutum HOM05D002142 ORTHO05D001189 3.0e-17 92.4 68 76.5
MELO3C024716.2 Cucumis melo HOM05D002142 ORTHO05D001189 3.9e-17 92.0 69 68.1
Gorai.003G072900 Gossypium raimondii HOM05D002142 ORTHO05D001189 3.9e-17 92.0 74 70.3
CiPaw.11G107700 Carya illinoinensis HOM05D002142 ORTHO05D001189 8.7e-17 90.9 72 66.7
Actinidia22848 Actinidia chinensis HOM05D002142 ORTHO05D001189 3.3e-16 89.0 70 68.6
Duzib084G0752 Durio zibethinus HOM05D002142 ORTHO05D001189 3.3e-16 89.0 78 66.7
Cpa.g.sc37.114 Carica papaya HOM05D002142 ORTHO05D001189 4.3e-16 88.6 65 73.8
Manes.01G000031 Manihot esculenta HOM05D002142 ORTHO05D001189 7.4e-16 87.8 84 57.1
Phvul.005G075600 Phaseolus vulgaris HOM05D002142 ORTHO05D001189 1.6e-15 86.7 65 72.3
Lalb_Chr06g0168571 Lupinus albus HOM05D002142 ORTHO05D001189 2.2e-15 86.3 76 61.8
PSO210G2933 Papaver somniferum HOM05D002142 ORTHO05D001189 2.8e-15 85.9 76 63.2
PSO761G0484 Papaver somniferum HOM05D002142 ORTHO05D001189 2.8e-15 85.9 76 63.2
VMungo1080G1137 Vigna mungo HOM05D002142 ORTHO05D001189 3.7e-15 85.5 65 70.8
Glyma.13G264100 Glycine max HOM05D002142 ORTHO05D001189 4.8e-15 85.1 52 80.8
Rhsim05G0127700 Rhododendron simsii HOM05D002142 ORTHO05D001189 2.4e-14 82.8 68 64.7
FAN08G3346 Fragaria x ananassa HOM05D002142 ORTHO05D001189 3.1e-14 82.4 55 72.7
C09p22420 Brassica napus HOM05D001066 ORTHO05D000891 4.1e-14 82.0 85 60.0
arahy.Tifrunner.gnm1.ann1.L5AWWV Arachis hypogaea HOM05D002142 ORTHO05D001189 5.3e-14 81.6 77 63.6
arahy.Tifrunner.gnm1.ann1.UKPS8N Arachis hypogaea HOM05D002142 ORTHO05D001189 5.3e-14 81.6 77 63.6
BolC9t55160H Brassica oleracea HOM05D002142 ORTHO05D001189 5.3e-14 81.6 91 58.2
Cc08_g17090 Coffea canephora HOM05D002142 ORTHO05D001189 5.3e-14 81.6 70 65.7
SEGI_03198 Sequoiadendron giganteum HOM05D002142 ORTHO05D001189 5.3e-14 81.6 64 62.5
Glyma.12G235000 Glycine max HOM05D002142 ORTHO05D001189 6.9e-14 81.3 52 82.7
Sc13g0007330 Simmondsia chinensis HOM05D002142 ORTHO05D001189 6.9e-14 81.3 65 69.2
FAN04G0632 Fragaria x ananassa HOM05D002142 ORTHO05D001189 9.0e-14 80.9 56 69.6
Rhsim05G0125200 Rhododendron simsii HOM05D002142 ORTHO05D001189 9.0e-14 80.9 77 59.7
FvH4_5g10240 Fragaria vesca HOM05D002142 ORTHO05D001189 1.5e-13 80.1 53 73.6
HanXRQChr13g0415741 Helianthus annuus HOM05D002142 ORTHO05D001189 1.5e-13 80.1 60 65.0
Lsat_1_v5_gn_6_80720 Lactuca sativa HOM05D002142 ORTHO05D001189 2.0e-13 79.7 56 71.4
HanXRQChr03g0083161 Helianthus annuus HOM05D002142 ORTHO05D001189 2.6e-13 79.3 59 69.5
A09p18020 Brassica napus HOM05D001066 ORTHO05D000891 3.4e-13 79.0 65 67.7
ECA233G5412 Erigeron canadensis HOM05D002142 ORTHO05D001189 3.4e-13 79.0 77 58.4
Aa31LG3G4040 Aethionema arabicum HOM05D000500 ORTHO05D000367 7.7e-13 77.8 72 59.7
BraA09t37433Z Brassica rapa HOM05D002142 ORTHO05D001189 7.7e-13 77.8 75 64.0
CsaV3_2G036160 Cucumis sativus L. HOM05D002142 ORTHO05D001189 2.9e-12 75.9 60 63.3
arahy.Tifrunner.gnm1.ann1.C9MEAE Arachis hypogaea HOM05D002142 ORTHO05D001189 3.8e-12 75.5 77 57.1
Atru.chr9.1824 Acer truncatum HOM05D002142 ORTHO05D001189 5.0e-12 75.1 63 65.1
BcaB07g31171 Brassica carinata HOM05D002142 ORTHO05D001189 5.0e-12 75.1 62 66.1
Aa31LG3G3650 Aethionema arabicum HOM05D000500 ORTHO05D000367 6.5e-12 74.7 74 56.8
CARHR010530 Cardamine hirsuta HOM05D002142 ORTHO05D001189 6.5e-12 74.7 73 63.0
Potri.011G148800 Populus trichocarpa HOM05D002142 ORTHO05D001189 1.4e-11 73.6 61 67.2
Sp1g09000 Schrenkiella parvula HOM05D002142 ORTHO05D001189 1.4e-11 73.6 80 57.5
Gorai.004G127800 Gossypium raimondii HOM05D002142 ORTHO05D001189 1.9e-11 73.2 68 63.2
CARHR053550 Cardamine hirsuta HOM05D002142 ORTHO05D001189 3.2e-11 72.4 66 65.2
TPR.G21610 Trifolium pratense HOM05D002142 ORTHO05D001189 3.2e-11 72.4 69 56.5
Ah.07g205000 Amaranthus hybridus HOM05D002142 ORTHO05D001189 4.2e-11 72.0 77 54.5
Ciclev10018664m.g Citrus clementina HOM05D002142 ORTHO05D001189 4.2e-11 72.0 75 56.0
Sabra16G0306300 Salix brachista HOM05D002142 ORTHO05D001189 5.5e-11 71.6 61 65.6
Atru.chr6.1560 Acer truncatum HOM05D002142 ORTHO05D001189 7.2e-11 71.2 77 55.8
Gohir.D08G121000 Gossypium hirsutum HOM05D002142 ORTHO05D001189 7.2e-11 71.2 73 57.5
Medtr1g078040 Medicago truncatula HOM05D002142 ORTHO05D001189 7.2e-11 71.2 78 53.8
Nitab4.5_0006317g0010 Nicotiana tabacum HOM05D002142 ORTHO05D001189 1.2e-10 70.5 68 60.3
SHI06884 Sapria himalayana HOM05D002142 ORTHO05D001189 1.6e-10 70.1 64 57.8
AUR62006045 Chenopodium quinoa HOM05D002142 ORTHO05D001189 2.7e-10 69.3 68 61.8
TPR.G21595 Trifolium pratense HOM05D002142 ORTHO05D001189 2.7e-10 69.3 70 61.4
BraA06t23919Z Brassica rapa HOM05D002142 ORTHO05D001189 4.6e-10 68.6 82 57.3
Potri.001G453200 Populus trichocarpa HOM05D002142 ORTHO05D001189 4.6e-10 68.6 60 66.7
Nitab4.5_0000450g0080 Nicotiana tabacum HOM05D002142 ORTHO05D001189 6.1e-10 68.2 64 62.5
Phvul.005G069700 Phaseolus vulgaris HOM05D002142 ORTHO05D001189 6.1e-10 68.2 51 70.6
Aa31LG2G10460 Aethionema arabicum HOM05D002142 ORTHO05D001189 7.9e-10 67.8 63 55.6
CSS0003827 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 1.0e-09 67.4 58 63.8
Medtr1g078050 Medicago truncatula HOM05D002142 ORTHO05D001189 1.4e-09 67.0 89 49.4
Peaxi162Scf00074g00016 Petunia axillaris HOM05D002142 ORTHO05D001189 1.4e-09 67.0 68 58.8
Prupe.5G135900 Prunus persica HOM05D002142 ORTHO05D001189 1.4e-09 67.0 77 51.9
TPR.G26577 Trifolium pratense HOM05D000638 ORTHO05D000801 1.8e-09 66.6 69 59.4
FAN13G0332 Fragaria x ananassa HOM05D002142 ORTHO05D001189 2.3e-09 66.2 54 63.0
Gohir.A08G108000 Gossypium hirsutum HOM05D002142 ORTHO05D001189 2.3e-09 66.2 69 58.0
Lalb_Chr02g0149531 Lupinus albus HOM05D002142 ORTHO05D001189 3.9e-09 65.5 80 51.2
Medtr1g066430 Medicago truncatula HOM05D000187 ORTHO05D005916 3.9e-09 65.5 70 51.4
Sabra11G0134000 Salix brachista HOM05D002142 ORTHO05D001189 3.9e-09 65.5 61 62.3
BcaC04g22177 Brassica carinata HOM05D002142 ORTHO05D001189 6.7e-09 64.7 84 56.0
Carub.0001s0983 Capsella rubella HOM05D002142 ORTHO05D001189 6.7e-09 64.7 80 53.8
C03p42370 Brassica napus HOM05D002142 ORTHO05D001189 8.8e-09 64.3 84 56.0
HanXRQChr03g0083351 Helianthus annuus HOM05D002142 ORTHO05D001189 1.5e-08 63.5 51 64.7
ATR0796G136 Amborella trichopoda HOM05D002142 ORTHO05D001189 2.5e-08 62.8 59 57.6
RcHm_v2.0_Chr7g0187971 Rosa chinensis HOM05D000500 ORTHO05D000367 4.3e-08 62.0 78 47.4
AUR62035583 Chenopodium quinoa HOM05D002142 ORTHO05D001189 9.7e-08 60.8 75 50.7
RcHm_v2.0_Chr7g0187981 Rosa chinensis HOM05D002142 ORTHO05D001189 1.3e-07 60.5 78 46.2
BcaC07g38601 Brassica carinata HOM05D002142 ORTHO05D001189 2.2e-07 59.7 62 58.1
Sed0006864 Sechium edule HOM05D002142 ORTHO05D001189 2.2e-07 59.7 60 58.3
Zm00001eb163070 Zea mays HOM05D002142 ORTHO05D001189 3.7e-07 58.9 66 51.5
ClCG09G016660 Citrullus lanatus HOM05D002142 ORTHO05D001189 4.8e-07 58.5 45 62.2
Hund02322 Selenicereus undatus HOM05D002142 ORTHO05D001189 6.3e-07 58.2 73 47.9
HPP92_028603 Vanilla planifolia HOM05D002142 ORTHO05D001189 6.3e-07 58.2 44 68.2
PGR042G3539 Punica granatum HOM05D002142 ORTHO05D001189 1.4e-06 57.0 68 54.4
Psat6g052800 Pisum sativum HOM05D002142 ORTHO05D001189 1.8e-06 56.6 73 50.7
Lj5A315G48 Lonicera japonica HOM05D002142 ORTHO05D001189 5.3e-06 55.1 53 52.8


User provided reference genes

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