Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.5e-254 881.7 469 100.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 2.1e-205 719.2 474 79.3
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.8e-205 718.8 474 78.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.1e-196 688.7 474 76.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.2e-196 688.0 485 76.7
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.2e-195 686.8 472 75.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.5e-195 686.4 515 72.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.4e-193 679.1 451 78.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 5.4e-193 677.9 471 75.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.2e-192 676.8 472 75.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.7e-192 675.6 513 70.4
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 8.6e-191 670.6 485 75.9
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.6e-190 667.9 503 75.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 7.3e-190 667.5 475 72.8
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 7.3e-190 667.5 475 73.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.6e-189 666.4 478 72.8
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.6e-189 665.2 484 72.1
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 6.2e-189 664.5 471 73.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 8.1e-189 664.1 473 72.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.4e-188 663.3 474 71.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.0e-188 661.8 477 72.5
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.9e-188 660.6 471 73.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-187 660.2 395 85.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 4.4e-187 658.3 492 70.5
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-187 658.3 476 71.4
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 9.9e-187 657.1 473 76.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.2e-186 656.0 474 72.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 4.9e-186 654.8 486 71.0
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-185 653.7 471 71.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.9e-185 652.9 473 71.9
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.4e-185 652.5 489 68.9
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.2e-185 652.1 486 70.6
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 5.4e-185 651.4 473 72.1
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 7.1e-185 651.0 474 73.2
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 9.2e-185 650.6 503 73.6
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.2e-184 650.2 473 73.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.6e-184 649.8 483 70.6
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.1e-184 649.4 474 71.3
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 6.0e-184 647.9 471 72.0
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 7.8e-184 647.5 471 72.0
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 7.8e-184 647.5 471 72.0
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.0e-183 647.1 474 73.2
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.7e-183 646.4 433 78.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.3e-183 646.0 478 72.6
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 5.1e-183 644.8 471 72.6
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.1e-182 643.7 471 72.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.5e-182 643.3 473 71.5
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.9e-182 642.9 473 71.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 7.3e-182 641.0 477 70.6
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 7.3e-182 641.0 481 70.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.6e-181 638.6 460 71.7
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.7e-181 638.3 471 69.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-180 636.0 471 69.2
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.3e-180 634.8 470 70.6
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.2e-179 633.6 523 65.4
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.0e-179 632.9 471 70.7
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.0e-179 632.9 480 70.0
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.0e-179 632.9 471 73.0
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 9.9e-179 630.6 470 72.1
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.7e-178 629.8 470 73.8
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.2e-178 629.4 483 70.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.2e-178 629.4 468 72.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-177 626.3 472 70.3
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.9e-177 626.3 470 70.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-177 626.3 471 71.5
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.4e-177 624.8 475 73.3
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 7.1e-177 624.4 472 68.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 9.3e-177 624.0 471 68.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.6e-176 623.2 473 68.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.6e-176 623.2 480 70.6
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.1e-176 622.9 471 73.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 3.5e-176 622.1 472 73.3
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-175 619.4 472 68.6
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.9e-175 618.6 456 69.5
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 5.6e-174 614.8 484 67.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 9.6e-174 614.0 472 69.7
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.1e-173 612.8 472 69.9
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 3.6e-173 612.1 472 67.8
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 6.2e-173 611.3 470 73.4
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.1e-172 610.5 520 63.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.8e-172 609.8 478 67.4
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 6.9e-172 607.8 473 67.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 6.9e-172 607.8 475 68.4
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 9.0e-172 607.4 473 67.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 9.0e-172 607.4 473 67.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 9.0e-172 607.4 472 67.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.6e-171 605.9 469 70.4
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.5e-171 605.1 483 69.2
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 5.8e-171 604.7 470 71.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 7.6e-171 604.4 472 67.6
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.7e-170 603.2 471 68.2
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.8e-170 602.1 470 67.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.4e-170 601.3 391 78.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.4e-169 598.2 460 68.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 7.1e-169 597.8 466 68.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-168 597.0 472 71.8
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.7e-168 595.9 529 61.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 3.0e-167 592.4 472 68.6
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 3.0e-167 592.4 379 78.1
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 9.6e-166 587.4 477 67.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-165 587.0 472 66.9
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.6e-165 586.6 498 65.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.8e-165 585.1 370 80.5
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 5.3e-164 581.6 472 64.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 5.3e-164 581.6 472 68.9
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.9e-164 581.3 472 68.9
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 7.6e-163 577.8 470 69.8
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.3e-162 577.0 483 63.6
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.9e-162 575.9 391 74.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.1e-160 569.7 471 66.2
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.0e-159 565.8 331 82.8
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.5e-158 562.8 478 63.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.6e-158 561.6 456 69.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 4.8e-157 558.5 486 61.5
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.4e-156 556.2 469 63.5
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 9.0e-156 554.3 486 62.1
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.7e-154 550.1 441 67.8
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 8.4e-154 547.7 442 68.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 8.4e-154 547.7 405 73.8
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.0e-151 540.8 471 62.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.8e-151 540.0 343 76.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.7e-151 538.1 507 60.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 5.7e-150 535.0 459 60.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.1e-148 530.8 473 65.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.4e-148 529.6 274 93.4
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.9e-146 522.7 274 91.6
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.6e-144 515.4 499 57.9
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 9.7e-142 507.7 331 73.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 3.7e-141 505.8 477 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.3e-135 486.5 329 71.4
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.3e-132 475.3 400 63.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-131 473.4 461 56.2
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.8e-130 469.2 335 71.0
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.0e-130 468.8 566 53.4
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.5e-130 468.0 408 64.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.8e-125 453.0 447 56.8
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.4e-124 449.9 282 74.1
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.9e-121 440.3 474 53.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-120 437.6 345 64.6
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.4e-118 429.1 455 54.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.2e-110 404.4 391 56.3
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 5.2e-103 379.0 360 55.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 9.8e-102 374.8 337 58.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-100 370.5 286 65.7
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.8e-83 312.0 469 47.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.4e-76 291.2 259 56.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.3e-66 258.1 467 40.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.6e-54 217.2 374 38.0
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.2e-44 183.7 245 46.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.0e-43 179.5 390 35.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.9e-39 166.0 120 70.8
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.8e-29 133.7 81 76.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 5.5e-28 129.8 128 55.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.8e-24 116.7 160 45.6
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 5.9e-22 109.8 201 40.3
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-21 108.6 210 41.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 4.2e-20 103.6 102 54.9
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.1e-19 101.3 102 53.9
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 5.2e-10 70.1 187 34.8
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.2e-08 64.7 205 25.9
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.8e-08 64.3 288 22.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 8.2e-08 62.8 286 23.4


User provided reference genes

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