Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 8.0e-85 317.0 154 100.0
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 9.7e-83 310.1 154 96.1
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.3e-81 304.3 151 96.7
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.6e-80 302.8 151 96.0
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.0e-80 302.4 150 96.0
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.6e-80 302.0 151 96.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 3.5e-80 301.6 151 96.0
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.5e-80 301.6 151 95.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.9e-80 300.8 151 95.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.9e-80 300.8 151 95.4
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 7.7e-80 300.4 151 95.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.0e-79 300.1 148 97.3
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.7e-79 299.3 151 94.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.7e-79 299.3 151 94.7
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.7e-79 299.3 151 94.7
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.7e-79 299.3 151 94.7
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.7e-79 299.3 154 92.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 148 96.6
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 148 96.6
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.9e-79 298.5 154 94.8
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 94.0
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 95.4
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.0e-79 297.7 148 95.9
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.0e-79 297.7 152 95.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 6.5e-79 297.4 154 94.2
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.5e-79 297.4 148 96.6
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.5e-79 297.4 154 94.2
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 8.5e-79 297.0 149 95.3
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 8.5e-79 297.0 154 94.2
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.5e-79 297.0 148 95.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 8.5e-79 297.0 151 94.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.5e-78 296.2 154 93.5
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.9e-78 295.8 149 94.6
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.9e-78 295.8 149 94.6
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.5e-78 295.4 151 94.0
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.5e-78 295.4 148 95.3
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.5e-78 295.4 154 94.8
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 3.2e-78 295.0 149 94.6
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 3.2e-78 295.0 151 93.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 3.2e-78 295.0 151 93.4
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.2e-78 295.0 154 94.2
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 4.2e-78 294.7 154 94.2
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 4.2e-78 294.7 148 94.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 4.2e-78 294.7 149 94.6
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 151 93.4
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 7.2e-78 293.9 154 90.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.2e-78 293.9 147 95.9
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 9.4e-78 293.5 145 97.2
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 9.4e-78 293.5 145 97.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 9.4e-78 293.5 145 97.2
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.0
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 9.4e-78 293.5 150 94.0
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 9.4e-78 293.5 150 94.0
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.0
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 9.4e-78 293.5 153 92.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 9.4e-78 293.5 153 92.8
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 93.9
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.6e-77 292.7 151 93.4
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 2.1e-77 292.4 154 92.2
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 149 94.6
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 2.7e-77 292.0 154 90.9
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.6e-77 291.6 149 93.3
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.6e-77 291.6 149 93.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 3.6e-77 291.6 152 91.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 4.7e-77 291.2 149 93.3
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 4.7e-77 291.2 154 91.6
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 6.1e-77 290.8 147 94.6
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 6.1e-77 290.8 147 94.6
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 90.3
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 90.3
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 153 90.2
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 90.3
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 90.3
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 8.0e-77 290.4 149 92.6
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 90.3
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 92.6
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.8e-76 289.3 154 89.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.8e-76 289.3 144 96.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.0e-76 288.5 151 92.7
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.2e-76 287.7 154 88.3
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.2e-76 287.7 154 88.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.8e-76 287.3 151 92.1
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 147 93.9
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.2e-75 286.6 144 95.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 91.9
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-75 286.2 151 92.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.5e-75 286.2 151 90.7
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.0e-75 285.8 152 90.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 4.4e-75 284.6 150 90.0
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 9.8e-75 283.5 152 89.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 92.7
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 92.7
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 151 91.4
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 91.9
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 91.9
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 4.8e-74 281.2 154 87.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.3e-74 280.8 149 92.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 8.3e-74 280.4 151 90.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 92.0
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 92.0
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.8e-73 279.3 153 87.6
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.9
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 5.4e-73 277.7 154 89.0
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 7.0e-73 277.3 155 86.5
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 7.0e-73 277.3 155 86.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 88.7
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.0e-72 275.8 144 91.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.7e-71 272.7 140 92.9
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-71 272.3 158 87.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 3.8e-71 271.6 144 88.9
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.9e-70 269.2 143 90.2
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.0e-68 263.5 140 91.4
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 8.8e-68 260.4 134 93.3
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.2e-67 260.0 140 90.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.2e-67 260.0 134 93.3
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.6e-67 258.8 127 96.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.6e-67 258.8 127 96.1
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 9.8e-67 256.9 134 92.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.3e-66 256.5 132 90.9
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.7e-66 256.1 132 93.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.7e-66 256.1 129 94.6
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.2e-66 255.8 129 93.8
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.8e-66 255.4 127 94.5
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.8e-66 255.4 130 93.1
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.7e-66 255.0 140 87.9
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 3.7e-66 255.0 131 92.4
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 3.7e-66 255.0 130 95.4
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 4.9e-66 254.6 132 90.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 6.3e-66 254.2 148 82.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 1.1e-65 253.4 127 94.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.1e-65 253.4 134 90.3
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.8e-65 252.7 131 92.4
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.8e-65 252.7 128 93.0
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 4.1e-65 251.5 153 82.4
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 9.1e-65 250.4 150 82.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.6e-64 249.6 146 83.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-64 249.2 131 90.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 4.5e-64 248.1 148 83.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.3e-63 245.7 140 85.7
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.4e-60 236.5 143 74.1
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.3e-60 235.7 144 74.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.4e-59 231.5 148 74.3
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.9e-58 228.8 154 75.3
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.1e-54 216.9 190 60.5
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 8.0e-53 210.7 145 73.8
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 6.8e-52 207.6 116 85.3
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.2e-51 206.8 125 78.4
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 8.3e-50 200.7 103 95.1
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.4e-49 199.9 103 94.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 9.2e-49 197.2 103 93.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.5e-46 189.1 114 76.3
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.9e-44 180.6 87 96.6
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-41 173.3 115 80.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 3.9e-39 165.2 85 91.8
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.1e-37 159.5 81 95.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.1e-37 159.5 79 91.1
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 8.9e-36 154.1 149 59.7
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.4e-33 146.0 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 5.1e-31 138.3 76 84.2
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.1e-29 132.9 83 80.7
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-28 129.8 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.8e-28 127.9 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.4e-27 125.6 71 87.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.5e-16 89.0 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.9e-15 85.5 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.4e-12 77.0 74 55.4


User provided reference genes

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