Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 0.0e+00 1595.5 1249 100.0
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-245 854.4 1255 59.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 5.6e-229 798.9 1253 59.8
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.3e-214 750.4 1223 58.4
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.5e-213 747.7 1438 54.9
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 4.6e-199 699.5 1330 56.5
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.8e-196 689.5 1388 53.7
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 3.0e-190 670.2 1335 50.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 5.1e-190 669.5 1335 50.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 8.7e-190 668.7 1335 53.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.5e-189 667.2 1390 54.6
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.3e-188 664.8 1388 51.8
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.8e-188 663.7 1388 44.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.4e-187 661.4 1385 50.4
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.9e-187 659.1 1110 46.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.2e-186 658.3 1386 50.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.2e-185 654.1 1388 56.6
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.2e-185 654.1 1330 51.9
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.4e-184 651.4 1385 51.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.2e-184 650.2 1358 57.1
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.1e-182 642.9 1323 51.9
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 5.3e-179 632.9 1388 51.4
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-174 618.6 1383 53.7
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.5e-173 614.8 1330 53.4
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.0e-173 614.4 1391 50.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 7.4e-173 612.5 1541 40.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 9.7e-173 612.1 1388 50.4
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.8e-172 610.5 1333 48.8
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.8e-172 609.8 1235 49.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 3.1e-171 607.1 1382 52.7
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.3e-171 606.3 1334 51.7
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.7e-169 601.3 1325 49.4
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.0e-167 592.4 1389 52.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.0e-166 590.5 1396 52.7
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 8.2e-164 582.4 1383 52.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.1e-163 582.0 1388 55.2
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 2.4e-163 580.9 1334 46.0
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 7.0e-163 579.3 1529 44.4
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-161 573.9 1382 52.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.8e-161 573.5 1331 54.6
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.8e-156 557.4 1329 46.7
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.4e-155 555.1 1572 43.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 9.1e-155 552.4 1383 52.0
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 6.5e-153 546.2 1337 53.2
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.3e-148 531.9 1386 53.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.1e-147 528.9 1391 45.2
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.7e-146 524.2 1396 50.6
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.7e-146 524.2 1396 50.6
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 7.7e-146 522.7 1384 50.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.7e-146 522.7 1388 50.6
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 4.7e-143 513.5 1586 42.6
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-142 511.5 1388 50.9
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 4.0e-142 510.4 1332 45.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 6.8e-142 509.6 1343 43.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.6e-138 496.9 1528 42.1
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.6e-135 487.3 1803 34.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 8.9e-134 482.6 1470 42.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.5e-133 481.9 1204 41.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.9e-132 477.6 1590 40.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.7e-132 477.2 1383 40.0
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.6e-130 470.3 1577 38.6
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 6.0e-130 469.9 945 62.3
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.3e-129 468.0 1334 49.3
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.4e-125 453.8 1309 40.6
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.3e-124 449.5 1353 47.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.1e-123 449.1 1390 46.9
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.9e-123 448.4 1352 48.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.4e-123 448.0 1527 41.2
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.3e-121 442.2 1362 49.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.9e-121 440.7 1382 42.0
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.3e-120 437.2 1382 46.2
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 9.5e-120 436.0 1382 48.5
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.5e-117 428.7 1331 43.8
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-114 419.1 1353 45.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.3e-112 409.8 1332 45.5
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.1e-110 404.4 1314 36.5
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.7e-108 398.7 1040 52.2
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.0e-106 390.2 1114 41.7
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.1e-105 387.1 1128 46.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 4.8e-103 380.6 1384 41.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.9e-99 368.6 567 45.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.4e-99 368.2 1382 43.4
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 4.2e-99 367.5 1384 46.2
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 8.1e-95 353.2 1281 44.2
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.3e-94 350.5 623 42.1
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-91 342.8 341 62.8
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.5e-88 332.4 1397 33.4
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.6e-85 320.1 1401 43.3
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.8e-84 317.8 1336 43.6
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.3e-79 300.4 426 49.8
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.8e-76 291.2 1298 46.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.7e-74 285.0 1329 44.3
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 6.7e-73 280.4 1099 28.9
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.8e-65 255.8 356 51.7
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.8e-63 248.4 403 44.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 8.2e-63 246.9 289 53.3
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.3e-60 239.6 1323 35.5
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 6.3e-55 220.7 545 45.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 9.1e-54 216.9 847 30.2
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.0e-52 213.4 462 39.0
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-51 209.9 826 37.4
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.1e-51 209.9 622 32.3
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.5e-51 207.6 481 46.2
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 8.5e-44 183.7 1325 30.1
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.0e-41 175.3 210 50.5
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 4.1e-38 164.9 1224 29.2
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.6e-37 162.9 512 28.7
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 4.5e-37 161.4 227 46.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.0e-36 160.2 1373 32.8
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-35 156.8 169 62.7
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.9e-35 156.0 1152 37.1
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 3.2e-35 155.2 410 39.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.6e-34 151.8 1100 46.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-33 149.8 585 31.3
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.8e-33 147.1 596 31.7
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.7e-32 144.4 602 30.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.7e-29 135.6 550 29.5
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.5e-29 135.2 178 48.3
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.5e-29 135.2 178 48.3
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.3e-28 133.3 308 36.0
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-27 129.8 462 30.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.9e-27 129.4 1290 38.6
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 7.3e-27 127.5 400 28.8
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.1e-26 125.9 174 46.6
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.8e-25 122.9 586 31.2
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.0e-25 122.1 621 27.5
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.4e-24 118.2 440 30.0
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.4e-24 118.2 440 30.0
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 7.5e-24 117.5 427 26.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.8e-24 117.1 413 30.3
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.7e-23 116.3 407 29.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.4e-23 114.4 440 29.5
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.6e-21 109.8 183 45.9
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-20 106.7 265 35.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.7e-20 106.3 1269 30.2
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-20 105.5 265 35.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-19 102.4 589 29.9
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 4.3e-19 101.7 1405 35.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 9.5e-19 100.5 202 42.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.2e-18 100.1 594 28.6
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.1e-18 99.4 171 44.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 4.7e-18 98.2 174 46.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-17 97.1 122 62.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.4e-16 92.0 533 30.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.2e-15 89.4 580 29.0
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-13 81.6 552 33.3
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 7.8e-13 80.9 261 33.7
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-12 80.1 174 42.0
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 6.6e-12 77.8 92 63.0
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 8.6e-12 77.4 106 50.0
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 1.5e-11 76.6 312 28.8
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.9e-11 76.3 483 30.2
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 9.5e-11 73.9 331 28.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 4.7e-10 71.6 89 46.1
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 8.1e-10 70.9 204 30.9
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-09 69.3 87 47.1
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.0e-09 68.6 601 28.3
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.5e-08 66.6 91 46.2
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.4e-08 65.1 178 33.7
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 5.8e-08 64.7 89 38.2
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 7.5e-08 64.3 202 34.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.2e-07 62.8 178 34.8
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.9e-07 61.6 79 45.6
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 4.9e-07 61.6 50 66.0
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 5.4e-06 58.2 312 28.2
Zm00001eb427940 Zea mays HOM05D003806 ORTHO05D004346 9.2e-06 57.4 117 34.2


User provided reference genes

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